MOLB 7950: Informatics and Statistics for Molecular Biology
This page contains an outline of the topics, content, and assignments for the semester. Note that this schedule will be updated as the semester progresses, with all changes documented here.
MOLB 7950 - Fall 2024 Schedule |
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| Classes held in-person from 9:00-10:30am | |||||||||||
Date |
Block |
Topic |
Instructor |
Location |
Title |
Links |
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Prepare |
Slides |
Exercises |
HW |
Key |
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| Week 1 | |||||||||||
| 01 | Mon, Aug 26, 2024 | Bootcamp | R | Taliaferro | Ed2N 2106 | Intro to R & RStudio | |||||
| 02 | Tue, Aug 27, 2024 | Bootcamp | R | Taliaferro | Ed1 1400 | Tidy data & tidyr | . |
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| 03 | Wed, Aug 28, 2024 | Bootcamp | R | Taliaferro | Ed2N 2102 | dplyr | . |
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| 04 | Thu, Aug 29, 2024 | Bootcamp | R | Taliaferro | AHSB 2200 | ggplot2 | . |
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| 05 | Fri, Aug 30, 2024 | Bootcamp | R | Taliaferro | Ed1 1400 | ggplot2 | . |
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| Week 2 | |||||||||||
| 06 | Mon, Sep 2, 2024 | - | - | - | NA | NO CLASS: LABOR DAY | . |
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| 07 | Tue, Sep 3, 2024 | Bootcamp | R | Taliaferro | Ed1 1400 | tidyverse odds & ends | . |
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| 08 | Wed, Sep 4, 2024 | Bootcamp | R | Taliaferro | Ed1 1400 | putting it all together | . |
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| 09 | Thu, Sep 5, 2024 | Bootcamp | R | Taliaferro | Ed1 1400 | putting it all together | . |
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| 10 | Fri, Sep 6, 2024 | Bootcamp | Statistics | Ramachandran | AHSB 2200 | Stats intro and history | . |
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| Week 3 | |||||||||||
| 11 | Mon, Sep 9, 2024 | Bootcamp | Statistics | Ramachandran | AHSB 2201 | Probability and descriptive stats | |||||
| 12 | Tue, Sep 10, 2024 | Bootcamp | Statistics | Ramachandran | Ed1 1400 | Hypothesis testing | . |
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| 13 | Wed, Sep 11, 2024 | Bootcamp | Statistics | Ramachandran | AHSB 2201 | Hypothesis testing | . |
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| 14 | Thu, Sep 12, 2024 | Bootcamp | Statistics | Mukherjee | AHSB 2201 | Exploratory data analysis | . |
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| 15 | Fri, Sep 13, 2024 | Bootcamp | Statistics | Mukherjee | AHSB 2201 | Big data concerns | . |
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| Week 4 | |||||||||||
| 16 | Mon, Sep 16, 2024 | DNA | Mapping chromatin structure and transactions | Ramachandran | AHSB 2201 | Experimental overview | |||||
| 17 | Wed, Sep 18, 2024 | DNA | Chromatin-centric methods | Ramachandran | AHSB 2201 | Information from fragment length distributions | . |
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| 18 | Fri, Sep 20, 2024 | DNA | Chromatin-centric methods | Ramachandran | AHSB 2201 | Meta-plots and heatmaps | . |
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| Week 5 | |||||||||||
| 19 | Mon, Sep 23, 2024 | DNA | Where do proteins bind in the genome? | Ramachandran | AHSB 2201 | Experimental overview | . |
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| 20 | Wed, Sep 25, 2024 | DNA | Factor-centric methods | Ramachandran | AHSB 2201 | Peak calling | . |
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| 21 | Fri, Sep 27, 2024 | DNA | Factor-centric methods | Ramachandran | AHSB 2201 | Sequence motif analysis | . |
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| Week 6 | |||||||||||
| 22 | Mon, Sep 30, 2024 | RNA | RNA-seq Overview | Taliaferro | AHSB 2201 | Concepts and techniques | . |
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| 23 | Wed, Oct 2, 2024 | RNA | Import, filtering, QC | Taliaferro | AHSB 2201 | metrics and sample similarity | . |
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| 24 | Fri, Oct 4, 2024 | RNA | Differential Gene Expression | Taliaferro | AHSB 2201 | DESeq2 | . |
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| Week 7 | |||||||||||
| 25 | Mon, Oct 7, 2024 | RNA | Alternative Splicing | Taliaferro | AHSB 2201 | rMATS | . |
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| 26 | Wed, Oct 9, 2024 | RNA | Review Proposals | Taliaferro | AHSB 2201 | Review Proposals | . |
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| 27 | Fri, Oct 11, 2024 | RNA | RBP-RNA 1 | Taliaferro | AHSB 2201 | CLIP-seq | . |
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| Week 8 | |||||||||||
| 28 | Mon, Oct 14, 2024 | RNA | RBP-RNA 2 | Taliaferro | AHSB 2201 | Data integrations | . |
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| 29 | Wed, Oct 16, 2024 | RNA | Long-read sequencing | Hesselberth | AHSB 2201 | - | . |
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| 30 | Fri, Oct 18, 2024 | - | - | - | NA | NO CLASS: CSDV RETREAT | . |
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| Week 9 | |||||||||||
| 31 | Mon, Oct 21, 2024 | RNA | Single-cell | Wells-Wrasman | AHSB 2201 | - | . |
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| 32 | Wed, Oct 23, 2024 | RNA | Single-cell | Wells-Wrasman | AHSB 2201 | - | . |
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| 33 | Fri, Oct 25, 2024 | - | - | - | NA | NO CLASS: MOLB RETREAT | . |
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| Week 10 | |||||||||||
| 34 | Mon, Oct 28, 2024 | Final | - | - | AHSB 2201 | Final project presentations | . |
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| 35 | Wed, Oct 30, 2024 | Final | - | - | AHSB 2201 | Final project presentations | . |
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