Function reference

pre-built references

ref_MCA

Matrix of average gene expression for single-cell RNA-seq.

ref_cortex_dev

Matrix of average gene detection on cortex development cell types

ref_hema_microarray

Matrix of average gene detection by microarray on sorted immune cell populations

ref_immgen

Matrix of average gene expression from immgen data

ref_moca_main

Matrix of average gene expression per cluster from single-cell sci-RNA-seq3 from Mouse Organogenesis Cell Atlas.

ref_mouse.rnaseq

Matrix of average gene expression from general mouse cell type data

ref_mouse_atlas

Atlas matrix of average gene expression aggregated from scRNA-seq data of mouse organisms

ref_pan_indrop

Matrix of average gene expression per cluster from single-cell RNA-seq pancreas data using indrop method.

ref_pan_smartseq2

Matrix of average gene expression per cluster from single-cell RNA-seq pancreas data using smartseq2 method.

ref_tabula_muris_drop

Matrix of average gene expression per cluster from single-cell RNA-seq from Tabula Muris (10x genomics).

ref_tabula_muris_facs

Matrix of average gene expression per cluster from single-cell RNA-seq from Tabula Muris (SMART-Seq2).