Atlas matrix of average gene expression aggregated from scRNA-seq data of mouse organisms

Data aggregated from NCBI Gene Expression Omnibus

Usage

ref_mouse_atlas

Format

An object of class function of length 1.

Source

<https://github.com/rnabioco/scRNA-seq-Cell-Ref-Matrix/blob/master/atlas/musMusculus/MouseAtlas.rds>

See also

Other ref: ref_MCA(), ref_cortex_dev(), ref_hema_microarray(), ref_immgen(), ref_moca_main(), ref_mouse.rnaseq(), ref_pan_indrop(), ref_pan_smartseq2(), ref_tabula_muris_drop(), ref_tabula_muris_facs()

Examples

ref_mouse_atlas(metadata = TRUE) 
#> ExperimentHub with 1 record
#> # snapshotDate(): 2022-04-26
#> # names(): EH3779
#> # package(): clustifyrdatahub
#> # $dataprovider: GEO
#> # $species: Mus musculus
#> # $rdataclass: data.frame
#> # $rdatadateadded: 2020-09-10
#> # $title: ref_mouse_atlas
#> # $description: Mouse Atlas scRNA-seq from 321 cell types
#> # $taxonomyid: 10090
#> # $genome: mm10
#> # $sourcetype: RDA
#> # $sourceurl: https://github.com/rnabioco/scRNA-seq-Cell-Ref-Matrix/bl...
#> # $sourcesize: NA
#> # $tags: c("SingleCellData", "SequencingData", "MicroarrayData",
#> #   "ExperimentHub", "RNASeqData", "PackageTypeData",
#> #   "ExpressionData") 
#> # retrieve record with 'object[["EH3779"]]'