Matrix of average gene expression per cluster from single-cell RNA-seq from Tabula Muris (10x genomics).

422,803 droplet libraries, 55,656 of which passed a QC cutoff of 500 genes and 1000 UMI

Usage

ref_tabula_muris_drop

Format

An object of class function of length 1.

Source

<https://tabula-muris.ds.czbiohub.org/>

See also

Other ref: ref_MCA(), ref_cortex_dev(), ref_hema_microarray(), ref_immgen(), ref_moca_main(), ref_mouse.rnaseq(), ref_mouse_atlas(), ref_pan_indrop(), ref_pan_smartseq2(), ref_tabula_muris_facs()

Examples

ref_tabula_muris_drop(metadata = TRUE)
#> ExperimentHub with 1 record
#> # snapshotDate(): 2022-04-26
#> # names(): EH3445
#> # package(): clustifyrdatahub
#> # $dataprovider: figshare
#> # $species: Mus musculus
#> # $rdataclass: data.frame
#> # $rdatadateadded: 2020-05-14
#> # $title: ref_tabula_muris_drop
#> # $description: Tabula Muris (10X)
#> # $taxonomyid: 10090
#> # $genome: mm10
#> # $sourcetype: Zip
#> # $sourceurl: https://ndownloader.figshare.com/articles/5821263
#> # $sourcesize: NA
#> # $tags: c("SingleCellData", "SequencingData", "MicroarrayData",
#> #   "ExperimentHub") 
#> # retrieve record with 'object[["EH3445"]]'