Matrix of average gene expression from general mouse cell type data

28 general cell types

Usage

ref_mouse.rnaseq

Format

An object of class function of length 1.

Source

["SingleR"]

See also

Other ref: ref_MCA(), ref_cortex_dev(), ref_hema_microarray(), ref_immgen(), ref_moca_main(), ref_mouse_atlas(), ref_pan_indrop(), ref_pan_smartseq2(), ref_tabula_muris_drop(), ref_tabula_muris_facs()

Examples

ref_mouse.rnaseq(metadata = TRUE)
#> ExperimentHub with 1 record
#> # snapshotDate(): 2022-04-26
#> # names(): EH3447
#> # package(): clustifyrdatahub
#> # $dataprovider: GitHub
#> # $species: Mus musculus
#> # $rdataclass: data.frame
#> # $rdatadateadded: 2020-05-14
#> # $title: ref_mouse.rnaseq
#> # $description: Mouse RNA-seq from 28 cell types
#> # $taxonomyid: 10090
#> # $genome: mm10
#> # $sourcetype: RDA
#> # $sourceurl: https://github.com/dviraran/SingleR/tree/master/data
#> # $sourcesize: NA
#> # $tags: c("SingleCellData", "SequencingData", "MicroarrayData",
#> #   "ExperimentHub") 
#> # retrieve record with 'object[["EH3447"]]'