Reference

pre-built references
gtex_bulk_matrix	Matrix of average gene expression from GTEx recount bulk RNA seq.
ref_MCA	Matrix of average gene expression for single-cell RNA-seq.
ref_cortex_dev	Matrix of average gene detection on cortex development cell types
ref_hema_microarray	Matrix of average gene detection by microarray on sorted immune cell populations
ref_immgen	Matrix of average gene expression from immgen data
ref_moca_main	Matrix of average gene expression per cluster from single-cell sci-RNA-seq3 from Mouse Organogenesis Cell Atlas.
ref_mouse.rnaseq	Matrix of average gene expression from general mouse cell type data
ref_pan_indrop	Matrix of average gene expression per cluster from single-cell RNA-seq pancreas data using indrop method.
ref_pan_smartseq2	Matrix of average gene expression per cluster from single-cell RNA-seq pancreas data using smartseq2 method.
ref_tabula_muris_drop	Matrix of average gene expression per cluster from single-cell RNA-seq from Tabula Muris (10x genomics).
ref_tabula_muris_facs	Matrix of average gene expression per cluster from single-cell RNA-seq from Tabula Muris (SMART-Seq2).
Data sets ported from Seurat
s_small	Small clustered Seurat2 object
s_small3	Small clustered Seurat3 object
Data sets from 10x Genomics
pbmc5_markers	Marker genes identified by Seurat from single-cell RNA-seq PBMCs from 5'end kit.
pbmc5_matrix	Matrix of single-cell RNA-seq PBMCs from 5'end kit.
pbmc5_meta	Meta-data for single-cell RNA-seq PBMCs from 5'end kit.
pbmc_avg	Matrix of average gene expression per cluster from single-cell RNA-seq PBMCs.
pbmc_markers	Marker genes identified by Seurat from single-cell RNA-seq PBMCs.
pbmc_markers_M3Drop	Marker genes identified by M3Drop from single-cell RNA-seq PBMCs.
pbmc_matrix	Matrix of single-cell RNA-seq PBMCs.
pbmc_meta	Meta-data for single-cell RNA-seq PBMCs.
pbmc_vargenes	variable genes identified by Seurat from single-cell RNA-seq PBMCs.
Data sets from the Mouse Cell Atlas
MCA_lung_mat	Matrix of single-cell RNA-seq cells of the lung.
MCA_lung_meta	Meta-data for single-cell RNA-seq of the lung.
Data sets from the Hemberg lab
pan_indrop_markers	Marker genes identified by Seurat from single-cell RNA-seq pancreas data using indrop method.
pan_indrop_matrix	Matrix of single-cell RNA-seq pancreas data using indrop method.
pan_indrop_meta	Meta-data for single-cell RNA-seq pancreas data using indrop method.
pan_indrop_vargenes	variable genes identified by Seurat from single-cell RNA-seq pancreas data using indrop method.
pan_smartseq2_matrix	Matrix of single-cell RNA-seq pancreas data using smartseq2 method.
pan_smartseq2_meta	Meta-data for single-cell RNA-seq pancreas data using smartseq2 method.
pan_smartseq2_vargenes	variable genes identified by Seurat from single-cell RNA-seq pancreas data using smartseq2 method.
Miscellaneous data sets
gtex_bulk_matrix	Matrix of average gene expression from GTEx recount bulk RNA seq.
yan_ref	Matrix of average gene expression from `yan` human embryo data
downrefs	table of references stored in clustifyrdata