Query rank bias results

Query rank bias results

Usage

plot_rank_bias(bias_df, organism = "hsapiens")

Arguments

bias_df

data.frame of rank diff matrix between cluster and reference cell types

organism

for GO term analysis, organism name: human - 'hsapiens', mouse - 'mmusculus'

Value

ggplot object of distribution and annotated GO terms

Examples

if (FALSE) { # \dontrun{
avg <- average_clusters(
    mat = pbmc_matrix_small,
    metadata = pbmc_meta,
    cluster_col = "classified",
    if_log = FALSE
)

rankdiff <- find_rank_bias(
    avg,
    cbmc_ref,
    query_genes = pbmc_vargenes
)

qres <- query_rank_bias(
    rankdiff,
    "CD14+ Mono",
    "CD14+ Mono"
)

g <- plot_rank_bias(
    qres
)
} # }