Query rank bias results
Arguments
- bias_list
list of rank diff matrix between cluster and reference cell types
- id_mat
name of cluster from average cluster matrix
- id_ref
name of cell type in reference matrix
Examples
avg <- average_clusters(
mat = pbmc_matrix_small,
metadata = pbmc_meta,
cluster_col = "classified",
if_log = FALSE
)
rankdiff <- find_rank_bias(
avg,
cbmc_ref,
query_genes = pbmc_vargenes
)
qres <- query_rank_bias(
rankdiff,
"CD14+ Mono",
"CD14+ Mono"
)