Skip to contents

Download 10x PMBC bam file and related data

Source: R/cache.R
download_human_pbmc.Rd

This function will download < 1 GB of data and store files in a BiocFileCache.

Usage

download_human_pbmc(verbose = TRUE)

Arguments

verbose

report messages

Value

A named list with paths to bam file, fasta file, bed file of editing_sites, and an .rds file with a SingleCellExperiment

See also

Other external-data: download_GSE99249(), download_NA12878()

Examples

# \donttest{
download_human_pbmc()
#> $bam
#> [1] "/github/home/.cache/R/raer/10k_PBMC_3p_nextgem_Chromium_X_intron_possorted_chr16_rp.bam"
#> 
#> $bai
#> [1] "/github/home/.cache/R/raer/10k_PBMC_3p_nextgem_Chromium_X_intron_possorted_chr16_rp.bam.bai"
#> 
#> $edit_sites
#> [1] "/github/home/.cache/R/raer/5c77ea04af7_rediportal_chr16.bed.gz"
#> 
#> $sce
#> [1] "/github/home/.cache/R/raer/5c76411a3b9_sce.rds"
#> 
# }