Download NA12878 BAM files and related data

This function will download ~100MB of data and store files in a BiocFileCache.

Usage

download_NA12878(verbose = TRUE)

Arguments

verbose

report messages

Value

A named list with paths to an RNA-seq and WGS BAM file, and a FASTA file from hg38 chromosome 4.

See also

Other external-data: download_GSE99249(), download_human_pbmc()

Examples

# \donttest{
download_NA12878()
#> $bams
#> [1] "/github/home/.cache/R/raer/ERR262996_dedup_chr4_sub.bam"           
#> [2] "/github/home/.cache/R/raer/SRR1258218_Aligned.sorted.dedup_sub.bam"
#> 
#> $bai
#> [1] "/github/home/.cache/R/raer/ERR262996_dedup_chr4_sub.bam.bai"           
#> [2] "/github/home/.cache/R/raer/SRR1258218_Aligned.sorted.dedup_sub.bam.bai"
#> 
#> $fasta
#> [1] "/github/home/.cache/R/raer/5c715cfbfb8_hg38_chr4.fa.bgz"
#> 
#> $snps
#> [1] "/github/home/.cache/R/raer/5c772bffd8c_chr4snps.bed.gz"
#> 
#> $rmsk
#> [1] "/github/home/.cache/R/raer/5c71936face_rmsk_hg38.tsv.gz"
#> 
# }