Skip to contents

Download GSE99249 BAM files and related data

Source: R/cache.R
download_GSE99249.Rd

This function will download ~ 250 MB of data and store files in a BiocFileCache.

Usage

download_GSE99249(verbose = TRUE)

Arguments

verbose

report messages

Value

A named list with paths to BAM files, a FASTA file and a bed file of known editing sites from hg38 chromosome 18.

See also

Other external-data: download_NA12878(), download_human_pbmc()

Examples

# \donttest{
download_GSE99249()
#> $bams
#> [1] "/github/home/.cache/R/raer/SRR5564260_dedup_sorted.bam"
#> [2] "/github/home/.cache/R/raer/SRR5564261_dedup_sorted.bam"
#> [3] "/github/home/.cache/R/raer/SRR5564269_dedup_sorted.bam"
#> [4] "/github/home/.cache/R/raer/SRR5564270_dedup_sorted.bam"
#> [5] "/github/home/.cache/R/raer/SRR5564271_dedup_sorted.bam"
#> [6] "/github/home/.cache/R/raer/SRR5564277_dedup_sorted.bam"
#> 
#> $bai
#> [1] "/github/home/.cache/R/raer/SRR5564260_dedup_sorted.bam.bai"
#> [2] "/github/home/.cache/R/raer/SRR5564261_dedup_sorted.bam.bai"
#> [3] "/github/home/.cache/R/raer/SRR5564269_dedup_sorted.bam.bai"
#> [4] "/github/home/.cache/R/raer/SRR5564270_dedup_sorted.bam.bai"
#> [5] "/github/home/.cache/R/raer/SRR5564271_dedup_sorted.bam.bai"
#> [6] "/github/home/.cache/R/raer/SRR5564277_dedup_sorted.bam.bai"
#> 
#> $fasta
#> [1] "/github/home/.cache/R/raer/5c7648d87d0_chr18.fasta.bgz"
#> 
#> $bed
#> [1] "/github/home/.cache/R/raer/5c7637c24e2_rediportal_hg38_chr18.bed.gz"
#> 
# }