generate negative markers from a list of exclusive positive markers
Source:R/utils.R
reverse_marker_matrix.Rdgenerate negative markers from a list of exclusive positive markers
Examples
reverse_marker_matrix(cbmc_m)
#> CD4 T CD8 T Memory CD4 T CD14+ Mono Naive CD4 T NK
#> 1 CD8B ITM2A ITM2A ITM2A ITM2A ITM2A
#> 2 ADCY2 ADCY2 CD8B CD8B CD8B CD8B
#> 3 S100A8 S100A8 S100A8 ADCY2 ADCY2 ADCY2
#> 4 CDHR3 CDHR3 CDHR3 CDHR3 S100A8 S100A8
#> 5 GNLY GNLY GNLY GNLY GNLY CDHR3
#> 6 IGHM IGHM IGHM IGHM IGHM IGHM
#> 7 CDKN1C CDKN1C CDKN1C CDKN1C CDKN1C CDKN1C
#> 8 SPINK2 SPINK2 SPINK2 SPINK2 SPINK2 SPINK2
#> 9 HBM HBM HBM HBM HBM HBM
#> 10 PF4 PF4 PF4 PF4 PF4 PF4
#> 11 ENHO ENHO ENHO ENHO ENHO ENHO
#> 12 LILRA4 LILRA4 LILRA4 LILRA4 LILRA4 LILRA4
#> 13 CD8A TXNIP TXNIP TXNIP TXNIP TXNIP
#> 14 PTGDR2 PTGDR2 CD8A CD8A CD8A CD8A
#> 15 S100A9 S100A9 S100A9 PTGDR2 PTGDR2 PTGDR2
#> 16 DICER1-AS1 DICER1-AS1 DICER1-AS1 DICER1-AS1 S100A9 S100A9
#> 17 NKG7 NKG7 NKG7 NKG7 NKG7 DICER1-AS1
#> 18 CD79A CD79A CD79A CD79A CD79A CD79A
#> 19 HES4 HES4 HES4 HES4 HES4 HES4
#> 20 C1QTNF4 C1QTNF4 C1QTNF4 C1QTNF4 C1QTNF4 C1QTNF4
#> 21 AHSP AHSP AHSP AHSP AHSP AHSP
#> 22 SDPR SDPR SDPR SDPR SDPR SDPR
#> 23 CD1E CD1E CD1E CD1E CD1E CD1E
#> 24 TPM2 TPM2 TPM2 TPM2 TPM2 TPM2
#> 25 S100B AES AES AES AES AES
#> 26 CD200R1 CD200R1 S100B S100B S100B S100B
#> 27 LYZ LYZ LYZ CD200R1 CD200R1 CD200R1
#> 28 RAD9A RAD9A RAD9A RAD9A LYZ LYZ
#> 29 CST7 CST7 CST7 CST7 CST7 RAD9A
#> 30 MS4A1 MS4A1 MS4A1 MS4A1 MS4A1 MS4A1
#> 31 CKB CKB CKB CKB CKB CKB
#> 32 KIAA0125 KIAA0125 KIAA0125 KIAA0125 KIAA0125 KIAA0125
#> 33 CA1 CA1 CA1 CA1 CA1 CA1
#> 34 TUBB1 TUBB1 TUBB1 TUBB1 TUBB1 TUBB1
#> 35 NDRG2 NDRG2 NDRG2 NDRG2 NDRG2 NDRG2
#> 36 SCT SCT SCT SCT SCT SCT
#> B CD16+ Mono CD34+ Eryth Mk DC
#> 1 ITM2A ITM2A ITM2A ITM2A ITM2A ITM2A
#> 2 CD8B CD8B CD8B CD8B CD8B CD8B
#> 3 ADCY2 ADCY2 ADCY2 ADCY2 ADCY2 ADCY2
#> 4 S100A8 S100A8 S100A8 S100A8 S100A8 S100A8
#> 5 CDHR3 CDHR3 CDHR3 CDHR3 CDHR3 CDHR3
#> 6 GNLY GNLY GNLY GNLY GNLY GNLY
#> 7 CDKN1C IGHM IGHM IGHM IGHM IGHM
#> 8 SPINK2 SPINK2 CDKN1C CDKN1C CDKN1C CDKN1C
#> 9 HBM HBM HBM SPINK2 SPINK2 SPINK2
#> 10 PF4 PF4 PF4 PF4 HBM HBM
#> 11 ENHO ENHO ENHO ENHO ENHO PF4
#> 12 LILRA4 LILRA4 LILRA4 LILRA4 LILRA4 LILRA4
#> 13 TXNIP TXNIP TXNIP TXNIP TXNIP TXNIP
#> 14 CD8A CD8A CD8A CD8A CD8A CD8A
#> 15 PTGDR2 PTGDR2 PTGDR2 PTGDR2 PTGDR2 PTGDR2
#> 16 S100A9 S100A9 S100A9 S100A9 S100A9 S100A9
#> 17 DICER1-AS1 DICER1-AS1 DICER1-AS1 DICER1-AS1 DICER1-AS1 DICER1-AS1
#> 18 NKG7 NKG7 NKG7 NKG7 NKG7 NKG7
#> 19 HES4 CD79A CD79A CD79A CD79A CD79A
#> 20 C1QTNF4 C1QTNF4 HES4 HES4 HES4 HES4
#> 21 AHSP AHSP AHSP C1QTNF4 C1QTNF4 C1QTNF4
#> 22 SDPR SDPR SDPR SDPR AHSP AHSP
#> 23 CD1E CD1E CD1E CD1E CD1E SDPR
#> 24 TPM2 TPM2 TPM2 TPM2 TPM2 TPM2
#> 25 AES AES AES AES AES AES
#> 26 S100B S100B S100B S100B S100B S100B
#> 27 CD200R1 CD200R1 CD200R1 CD200R1 CD200R1 CD200R1
#> 28 LYZ LYZ LYZ LYZ LYZ LYZ
#> 29 RAD9A RAD9A RAD9A RAD9A RAD9A RAD9A
#> 30 CST7 CST7 CST7 CST7 CST7 CST7
#> 31 CKB MS4A1 MS4A1 MS4A1 MS4A1 MS4A1
#> 32 KIAA0125 KIAA0125 CKB CKB CKB CKB
#> 33 CA1 CA1 CA1 KIAA0125 KIAA0125 KIAA0125
#> 34 TUBB1 TUBB1 TUBB1 TUBB1 CA1 CA1
#> 35 NDRG2 NDRG2 NDRG2 NDRG2 NDRG2 TUBB1
#> 36 SCT SCT SCT SCT SCT SCT
#> pDCs
#> 1 ITM2A
#> 2 CD8B
#> 3 ADCY2
#> 4 S100A8
#> 5 CDHR3
#> 6 GNLY
#> 7 IGHM
#> 8 CDKN1C
#> 9 SPINK2
#> 10 HBM
#> 11 PF4
#> 12 ENHO
#> 13 TXNIP
#> 14 CD8A
#> 15 PTGDR2
#> 16 S100A9
#> 17 DICER1-AS1
#> 18 NKG7
#> 19 CD79A
#> 20 HES4
#> 21 C1QTNF4
#> 22 AHSP
#> 23 SDPR
#> 24 CD1E
#> 25 AES
#> 26 S100B
#> 27 CD200R1
#> 28 LYZ
#> 29 RAD9A
#> 30 CST7
#> 31 MS4A1
#> 32 CKB
#> 33 KIAA0125
#> 34 CA1
#> 35 TUBB1
#> 36 NDRG2