Build reference atlases from external UCSC cellbrowsers
Source:R/cellbrowsers.R
get_ucsc_reference.Rd
Build reference atlases from external UCSC cellbrowsers
Arguments
- cb_url
URL of cellbrowser dataset (e.g. http://cells.ucsc.edu/?ds=cortex-dev). Note that the URL must contain the ds=dataset-name suffix.
- cluster_col
annotation field for summarizing gene expression (e.g. clustering, cell-type name, samples, etc.)
- ...
additional args passed to average_clusters