clustifyr: Classifier for Single-cell RNA-seq Using Cell Clusters

Package designed to aid in classifying cells from single-cell RNA sequencing data using external reference data (e.g., bulk RNA-seq, scRNA-seq, microarray, gene lists). A variety of correlation based methods and gene list enrichment methods are provided to assist cell type assignment.

See also

Useful links:

• https://github.com/rnabioco/clustifyr

• https://rnabioco.github.io/clustifyr/

• Report bugs at https://github.com/rnabioco/clustifyr/issues

Author

Maintainer: Rui Fu ray.sinensis@gmail.com

Authors:

• Kent Riemondy kent.riemondy@gmail.com

Other contributors:

• Austin Gillen austin.gillen@ucdenver.edu [contributor]

• Chengzhe Tian Chengzhe.Tian@colorado.edu [contributor]

• Jay Hesselberth jay.hesselberth@gmail.com [contributor]

• Yue Hao haoyuethink@gmail.com [contributor]

• Michelle Daya michelle.daya@ucdenver.edu [contributor]

• Sidhant Puntambekar sidhantnp@yahoo.com [contributor]

• RNA Bioscience Initiative [funder, copyright holder]