Sample data for RNA editing analysis

A subset of data from an RNA-seq experiment to measure the effects of IFN treatment of cell lines with wild-type or ADAR1-KO

Usage

data(rse_adar_ifn)

Format

rse_adar_ifn

class: RangedSummarizedExperiment
dim: 74 2
metadata(0):
assays(7): Var nRef ... nC nG
rownames(74): SSR3_102_- SSR3_125_- ... DHFR_430_- DHFR_513_-
rowData names(1): Ref
colnames(2): wt adar1_ko
colData names(1): sample

Source

https://www.ncbi.nlm.nih.gov/bioproject/PRJNA386593

Value

RangedSummarizedExperiment populated with pileup data

References

https://pubmed.ncbi.nlm.nih.gov/29395325/