Tabulate top DESeq2 differential expression results. — tabulate_deseq • clover

Create a formatted gt table of the top significant tRNAs from tidy_deseq_results() output, sorted by p-value.

Usage

tabulate_deseq(data, lab_col = "ref", n = 10)

Arguments

data: A tibble from tidy_deseq_results() with at least log2FoldChange, pvalue, padj, and significant columns.
lab_col: Column name (string) used for row labels. Default "ref".
n: Maximum number of rows to display. Default 10.

Value

An interactive gt_tbl object with search, sorting, and pagination.

Examples

res <- tibble::tibble(
  ref = paste0("tRNA-", 1:20),
  log2FoldChange = rnorm(20),
  pvalue = runif(20, 0, 0.1),
  padj = runif(20, 0, 0.2),
  significant = c(rep(TRUE, 10), rep(FALSE, 10))
)
if (requireNamespace("gt", quietly = TRUE)) {
  tabulate_deseq(res)
}