Build a charging count matrix for differential charging analysis.
Source:R/deseq.R
charging_count_matrix.RdCreate a count matrix with two columns per sample (charged and uncharged), suitable for a DESeq2 interaction design that tests for differences in charging ratios between conditions.
Arguments
- charging_data
A tibble of combined charging data with columns
ref,counts_charged,counts_uncharged, andsample_id(as returned byread_charging_multi()).- min_count
Minimum total count across all columns for a tRNA to be retained. Default
10.
Value
An integer matrix with tRNA names as row names. Column names
are {sample_id}_charged and {sample_id}_uncharged.
Examples
results <- read_pipeline_results(
clover_example("ecoli/config.yaml"),
types = "charging"
)
charging_count_matrix(results$charging)
#> wt-15-ctl-01_charged wt-15-ctl-01_uncharged
#> host-tRNA-Ala-GGC-1-1 174 124
#> host-tRNA-Ala-GGC-1-1-uncharged 1173 3220
#> host-tRNA-Ala-GGC-1-2 818 807
#> host-tRNA-Ala-GGC-1-2-uncharged 1205 3186
#> host-tRNA-Ala-TGC-1-1 351 167
#> host-tRNA-Ala-TGC-1-1-uncharged 1390 2395
#> host-tRNA-Ala-TGC-1-2 615 214
#> host-tRNA-Ala-TGC-1-2-uncharged 4739 13203
#> host-tRNA-Ala-TGC-1-3 1167 1162
#> host-tRNA-Ala-TGC-1-3-uncharged 1321 2330
#> host-tRNA-Arg-ACG-1-1 1039 375
#> host-tRNA-Arg-ACG-1-1-uncharged 3860 6538
#> host-tRNA-Arg-ACG-1-2 1850 515
#> host-tRNA-Arg-ACG-1-2-uncharged 3874 6411
#> host-tRNA-Arg-ACG-1-3 1089 373
#> host-tRNA-Arg-ACG-1-3-uncharged 4056 8736
#> host-tRNA-Arg-ACG-1-4 1271 447
#> host-tRNA-Arg-ACG-1-4-uncharged 3777 6331
#> host-tRNA-Arg-CCG-1-1 137 128
#> host-tRNA-Arg-CCG-1-1-uncharged 498 985
#> host-tRNA-Arg-CCT-1-1 141 42
#> host-tRNA-Arg-CCT-1-1-uncharged 276 325
#> host-tRNA-Arg-TCT-1-1 252 145
#> host-tRNA-Arg-TCT-1-1-uncharged 754 1601
#> host-tRNA-Asn-GTT-1-1 96 308
#> host-tRNA-Asn-GTT-1-1-uncharged 193 1755
#> host-tRNA-Asn-GTT-1-2 59 225
#> host-tRNA-Asn-GTT-1-2-uncharged 234 1901
#> host-tRNA-Asn-GTT-1-3 82 330
#> host-tRNA-Asn-GTT-1-3-uncharged 204 1839
#> host-tRNA-Asn-GTT-1-4 74 314
#> host-tRNA-Asn-GTT-1-4-uncharged 1698 15791
#> host-tRNA-Asp-GTC-1-1 1017 429
#> host-tRNA-Asp-GTC-1-1-uncharged 2356 3797
#> host-tRNA-Asp-GTC-1-2 1478 1834
#> host-tRNA-Asp-GTC-1-2-uncharged 2446 3556
#> host-tRNA-Asp-GTC-1-3 1497 1827
#> host-tRNA-Asp-GTC-1-3-uncharged 2382 3801
#> host-tRNA-Cys-GCA-1-1 518 626
#> host-tRNA-Cys-GCA-1-1-uncharged 2501 7151
#> host-tRNA-Gln-CTG-1-1 778 315
#> host-tRNA-Gln-CTG-1-1-uncharged 1795 3214
#> host-tRNA-Gln-CTG-1-2 1037 1749
#> host-tRNA-Gln-CTG-1-2-uncharged 1754 3220
#> host-tRNA-Gln-TTG-1-1 654 276
#> host-tRNA-Gln-TTG-1-1-uncharged 2133 6797
#> host-tRNA-Gln-TTG-1-2 870 426
#> host-tRNA-Gln-TTG-1-2-uncharged 1716 1557
#> host-tRNA-Glu-TTC-1-1 2149 2205
#> host-tRNA-Glu-TTC-1-1-uncharged 1403 851
#> host-tRNA-Glu-TTC-1-2 2211 2267
#> host-tRNA-Glu-TTC-1-2-uncharged 1374 898
#> host-tRNA-Glu-TTC-1-3 763 404
#> host-tRNA-Glu-TTC-1-3-uncharged 3521 3099
#> host-tRNA-Glu-TTC-1-4 792 424
#> host-tRNA-Glu-TTC-1-4-uncharged 3661 8556
#> host-tRNA-Gly-CCC-1-1 210 105
#> host-tRNA-Gly-CCC-1-1-uncharged 949 2007
#> host-tRNA-Gly-GCC-1-1 559 288
#> host-tRNA-Gly-GCC-1-1-uncharged 1894 8805
#> host-tRNA-Gly-GCC-1-2 574 292
#> host-tRNA-Gly-GCC-1-2-uncharged 1983 8795
#> host-tRNA-Gly-GCC-1-3 446 217
#> host-tRNA-Gly-GCC-1-3-uncharged 1962 8931
#> host-tRNA-Gly-GCC-1-4 875 1274
#> host-tRNA-Gly-GCC-1-4-uncharged 1484 2866
#> host-tRNA-Gly-TCC-1-1 577 383
#> host-tRNA-Gly-TCC-1-1-uncharged 1807 4468
#> host-tRNA-His-GTG-1-1 386 796
#> host-tRNA-His-GTG-1-1-uncharged 1180 8413
#> host-tRNA-Ile-GAT-1-1 2115 472
#> host-tRNA-Ile-GAT-1-1-uncharged 6891 4511
#> host-tRNA-Ile-GAT-1-2 1749 383
#> host-tRNA-Ile-GAT-1-2-uncharged 6852 4235
#> host-tRNA-Ile-GAT-1-3 2089 486
#> host-tRNA-Ile-GAT-1-3-uncharged 7010 4370
#> host-tRNA-Ile2-CAT-1-1 405 156
#> host-tRNA-Ile2-CAT-1-1-uncharged 734 443
#> host-tRNA-Ile2-CAT-1-2 51 17
#> host-tRNA-Ile2-CAT-1-2-uncharged 97 63
#> host-tRNA-Leu-CAA-1-1 853 522
#> host-tRNA-Leu-CAA-1-1-uncharged 1356 2060
#> host-tRNA-Leu-CAG-1-1 991 340
#> host-tRNA-Leu-CAG-1-1-uncharged 3371 2806
#> host-tRNA-Leu-CAG-1-2 1161 309
#> host-tRNA-Leu-CAG-1-2-uncharged 4611 9485
#> host-tRNA-Leu-CAG-1-3 601 207
#> host-tRNA-Leu-CAG-1-3-uncharged 2054 2855
#> host-tRNA-Leu-CAG-1-4 2868 1268
#> host-tRNA-Leu-CAG-1-4-uncharged 4609 9690
#> host-tRNA-Leu-GAG-1-1 697 245
#> host-tRNA-Leu-GAG-1-1-uncharged 2814 5304
#> host-tRNA-Leu-TAA-1-1 1205 514
#> host-tRNA-Leu-TAA-1-1-uncharged 2899 4926
#> host-tRNA-Leu-TAG-1-1 1155 840
#> host-tRNA-Leu-TAG-1-1-uncharged 2111 2922
#> host-tRNA-Lys-TTT-1-1 609 222
#> host-tRNA-Lys-TTT-1-1-uncharged 1867 4304
#> host-tRNA-Lys-TTT-1-2 1533 419
#> host-tRNA-Lys-TTT-1-2-uncharged 948 1173
#> host-tRNA-Lys-TTT-1-3 620 270
#> host-tRNA-Lys-TTT-1-3-uncharged 1895 4150
#> host-tRNA-Lys-TTT-1-4 399 284
#> host-tRNA-Lys-TTT-1-4-uncharged 1834 4279
#> host-tRNA-Lys-TTT-1-5 385 260
#> host-tRNA-Lys-TTT-1-5-uncharged 949 1232
#> host-tRNA-Lys-TTT-1-6 399 277
#> host-tRNA-Lys-TTT-1-6-uncharged 2305 1264
#> host-tRNA-Met-CAT-1-1 835 562
#> host-tRNA-Met-CAT-1-1-uncharged 2447 5185
#> host-tRNA-Met-CAT-1-2 799 615
#> host-tRNA-Met-CAT-1-2-uncharged 1821 1303
#> host-tRNA-Phe-GAA-1-1 963 1388
#> host-tRNA-Phe-GAA-1-1-uncharged 714 1287
#> host-tRNA-Phe-GAA-1-2 301 202
#> host-tRNA-Phe-GAA-1-2-uncharged 1026 1042
#> host-tRNA-Pro-CGG-1-1 697 831
#> host-tRNA-Pro-CGG-1-1-uncharged 2403 8386
#> host-tRNA-Pro-GGG-1-1 137 165
#> host-tRNA-Pro-GGG-1-1-uncharged 417 1450
#> host-tRNA-Pro-TGG-1-1 640 572
#> host-tRNA-Pro-TGG-1-1-uncharged 2497 9690
#> host-tRNA-SeC-TCA-1-1 25 19
#> host-tRNA-SeC-TCA-1-1-uncharged 402 801
#> host-tRNA-Ser-CGA-1-1 46 63
#> host-tRNA-Ser-CGA-1-1-uncharged 664 831
#> host-tRNA-Ser-GCT-1-1 776 1068
#> host-tRNA-Ser-GCT-1-1-uncharged 2168 7195
#> host-tRNA-Ser-GGA-1-1 455 839
#> host-tRNA-Ser-GGA-1-1-uncharged 1161 4519
#> host-tRNA-Ser-GGA-1-2 181 102
#> host-tRNA-Ser-GGA-1-2-uncharged 873 2209
#> host-tRNA-Ser-TGA-1-1 284 688
#> host-tRNA-Ser-TGA-1-1-uncharged 1169 5787
#> host-tRNA-Thr-CGT-1-1 347 179
#> host-tRNA-Thr-CGT-1-1-uncharged 1124 1072
#> host-tRNA-Thr-CGT-1-2 3 3
#> host-tRNA-Thr-CGT-1-2-uncharged 250 90
#> host-tRNA-Thr-GGT-1-1 924 396
#> host-tRNA-Thr-GGT-1-1-uncharged 2646 2727
#> host-tRNA-Thr-GGT-1-2 1170 350
#> host-tRNA-Thr-GGT-1-2-uncharged 4473 3952
#> host-tRNA-Thr-TGT-1-1 1861 968
#> host-tRNA-Thr-TGT-1-1-uncharged 2934 2959
#> host-tRNA-Trp-CCA-1-1 889 586
#> host-tRNA-Trp-CCA-1-1-uncharged 4400 5167
#> host-tRNA-Tyr-GTA-1-1 1290 606
#> host-tRNA-Tyr-GTA-1-1-uncharged 3627 5232
#> host-tRNA-Tyr-GTA-1-2 413 233
#> host-tRNA-Tyr-GTA-1-2-uncharged 1265 1914
#> host-tRNA-Tyr-GTA-1-3 526 222
#> host-tRNA-Tyr-GTA-1-3-uncharged 1324 1939
#> host-tRNA-Val-GAC-1-1 437 57
#> host-tRNA-Val-GAC-1-1-uncharged 1862 1260
#> host-tRNA-Val-GAC-1-2 813 193
#> host-tRNA-Val-GAC-1-2-uncharged 2254 1478
#> host-tRNA-Val-TAC-1-1 837 553
#> host-tRNA-Val-TAC-1-1-uncharged 1001 692
#> host-tRNA-Val-TAC-1-2 518 56
#> host-tRNA-Val-TAC-1-2-uncharged 1616 1658
#> host-tRNA-Val-TAC-1-3 473 70
#> host-tRNA-Val-TAC-1-3-uncharged 1540 1705
#> host-tRNA-Val-TAC-1-4 350 101
#> host-tRNA-Val-TAC-1-4-uncharged 1092 358
#> host-tRNA-Val-TAC-1-5 441 82
#> host-tRNA-Val-TAC-1-5-uncharged 1170 337
#> host-tRNA-fMet-CAT-1-1 183 487
#> host-tRNA-fMet-CAT-1-1-uncharged 1233 7892
#> host-tRNA-fMet-CAT-1-2 147 471
#> host-tRNA-fMet-CAT-1-2-uncharged 1080 5460
#> host-tRNA-fMet-CAT-1-3 193 502
#> host-tRNA-fMet-CAT-1-3-uncharged 2856 10320
#> host-tRNA-fMet-CAT-1-4 180 356
#> host-tRNA-fMet-CAT-1-4-uncharged 1500 5513
#> phage-tRNA-Arg-TCT 6 2
#> phage-tRNA-Arg-TCT-uncharged 302 170
#> phage-tRNA-Gln-TTG 13 9
#> phage-tRNA-Gln-TTG-uncharged 625 1701
#> phage-tRNA-Gly-TCC 20 7
#> phage-tRNA-Gly-TCC-uncharged 1314 652
#> phage-tRNA-Ile2-CAT 5 4
#> phage-tRNA-Ile2-CAT-uncharged 348 154
#> phage-tRNA-Leu-TAA 8 2
#> phage-tRNA-Leu-TAA-uncharged 186 121
#> phage-tRNA-Pro-TGG 5 6
#> phage-tRNA-Pro-TGG-uncharged 160 497
#> phage-tRNA-Ser-TGA 1 1
#> phage-tRNA-Ser-TGA-uncharged 272 189
#> phage-tRNA-Thr-TGT 11 1
#> phage-tRNA-Thr-TGT-uncharged 224 146
#> wt-15-ctl-02_charged wt-15-ctl-02_uncharged
#> host-tRNA-Ala-GGC-1-1 242 155
#> host-tRNA-Ala-GGC-1-1-uncharged 1414 3600
#> host-tRNA-Ala-GGC-1-2 799 707
#> host-tRNA-Ala-GGC-1-2-uncharged 1573 3557
#> host-tRNA-Ala-TGC-1-1 340 270
#> host-tRNA-Ala-TGC-1-1-uncharged 1779 3300
#> host-tRNA-Ala-TGC-1-2 548 260
#> host-tRNA-Ala-TGC-1-2-uncharged 4583 12683
#> host-tRNA-Ala-TGC-1-3 1162 1029
#> host-tRNA-Ala-TGC-1-3-uncharged 1785 3326
#> host-tRNA-Arg-ACG-1-1 806 405
#> host-tRNA-Arg-ACG-1-1-uncharged 3054 7610
#> host-tRNA-Arg-ACG-1-2 1141 454
#> host-tRNA-Arg-ACG-1-2-uncharged 3053 7588
#> host-tRNA-Arg-ACG-1-3 781 379
#> host-tRNA-Arg-ACG-1-3-uncharged 3268 10571
#> host-tRNA-Arg-ACG-1-4 967 434
#> host-tRNA-Arg-ACG-1-4-uncharged 2976 7483
#> host-tRNA-Arg-CCG-1-1 164 231
#> host-tRNA-Arg-CCG-1-1-uncharged 488 1310
#> host-tRNA-Arg-CCT-1-1 181 67
#> host-tRNA-Arg-CCT-1-1-uncharged 860 614
#> host-tRNA-Arg-TCT-1-1 149 135
#> host-tRNA-Arg-TCT-1-1-uncharged 454 1541
#> host-tRNA-Asn-GTT-1-1 89 319
#> host-tRNA-Asn-GTT-1-1-uncharged 274 2387
#> host-tRNA-Asn-GTT-1-2 54 227
#> host-tRNA-Asn-GTT-1-2-uncharged 284 2437
#> host-tRNA-Asn-GTT-1-3 86 292
#> host-tRNA-Asn-GTT-1-3-uncharged 255 2489
#> host-tRNA-Asn-GTT-1-4 65 319
#> host-tRNA-Asn-GTT-1-4-uncharged 1734 17928
#> host-tRNA-Asp-GTC-1-1 1247 543
#> host-tRNA-Asp-GTC-1-1-uncharged 2790 4731
#> host-tRNA-Asp-GTC-1-2 2103 1910
#> host-tRNA-Asp-GTC-1-2-uncharged 2783 4700
#> host-tRNA-Asp-GTC-1-3 2066 2002
#> host-tRNA-Asp-GTC-1-3-uncharged 2951 4668
#> host-tRNA-Cys-GCA-1-1 469 783
#> host-tRNA-Cys-GCA-1-1-uncharged 8944 13434
#> host-tRNA-Gln-CTG-1-1 512 297
#> host-tRNA-Gln-CTG-1-1-uncharged 1528 4223
#> host-tRNA-Gln-CTG-1-2 1032 1704
#> host-tRNA-Gln-CTG-1-2-uncharged 1458 4152
#> host-tRNA-Gln-TTG-1-1 457 298
#> host-tRNA-Gln-TTG-1-1-uncharged 2130 7785
#> host-tRNA-Gln-TTG-1-2 600 414
#> host-tRNA-Gln-TTG-1-2-uncharged 1326 2185
#> host-tRNA-Glu-TTC-1-1 2630 2474
#> host-tRNA-Glu-TTC-1-1-uncharged 1568 1289
#> host-tRNA-Glu-TTC-1-2 2555 2365
#> host-tRNA-Glu-TTC-1-2-uncharged 1615 1281
#> host-tRNA-Glu-TTC-1-3 821 408
#> host-tRNA-Glu-TTC-1-3-uncharged 3482 3776
#> host-tRNA-Glu-TTC-1-4 772 472
#> host-tRNA-Glu-TTC-1-4-uncharged 4511 9956
#> host-tRNA-Gly-CCC-1-1 254 136
#> host-tRNA-Gly-CCC-1-1-uncharged 1584 3342
#> host-tRNA-Gly-GCC-1-1 513 340
#> host-tRNA-Gly-GCC-1-1-uncharged 2812 13171
#> host-tRNA-Gly-GCC-1-2 563 308
#> host-tRNA-Gly-GCC-1-2-uncharged 2713 12807
#> host-tRNA-Gly-GCC-1-3 490 342
#> host-tRNA-Gly-GCC-1-3-uncharged 2751 13322
#> host-tRNA-Gly-GCC-1-4 1064 1612
#> host-tRNA-Gly-GCC-1-4-uncharged 2273 5011
#> host-tRNA-Gly-TCC-1-1 725 520
#> host-tRNA-Gly-TCC-1-1-uncharged 2358 6732
#> host-tRNA-His-GTG-1-1 340 814
#> host-tRNA-His-GTG-1-1-uncharged 1779 9806
#> host-tRNA-Ile-GAT-1-1 2770 583
#> host-tRNA-Ile-GAT-1-1-uncharged 9493 5853
#> host-tRNA-Ile-GAT-1-2 2205 547
#> host-tRNA-Ile-GAT-1-2-uncharged 9265 5707
#> host-tRNA-Ile-GAT-1-3 2808 589
#> host-tRNA-Ile-GAT-1-3-uncharged 9244 5843
#> host-tRNA-Ile2-CAT-1-1 540 196
#> host-tRNA-Ile2-CAT-1-1-uncharged 960 517
#> host-tRNA-Ile2-CAT-1-2 57 13
#> host-tRNA-Ile2-CAT-1-2-uncharged 250 94
#> host-tRNA-Leu-CAA-1-1 1118 674
#> host-tRNA-Leu-CAA-1-1-uncharged 2171 3212
#> host-tRNA-Leu-CAG-1-1 1102 360
#> host-tRNA-Leu-CAG-1-1-uncharged 3882 4138
#> host-tRNA-Leu-CAG-1-2 1043 280
#> host-tRNA-Leu-CAG-1-2-uncharged 4840 9444
#> host-tRNA-Leu-CAG-1-3 757 221
#> host-tRNA-Leu-CAG-1-3-uncharged 2536 3705
#> host-tRNA-Leu-CAG-1-4 2774 1068
#> host-tRNA-Leu-CAG-1-4-uncharged 4999 9517
#> host-tRNA-Leu-GAG-1-1 839 270
#> host-tRNA-Leu-GAG-1-1-uncharged 3858 6860
#> host-tRNA-Leu-TAA-1-1 1392 670
#> host-tRNA-Leu-TAA-1-1-uncharged 4005 6878
#> host-tRNA-Leu-TAG-1-1 1161 757
#> host-tRNA-Leu-TAG-1-1-uncharged 2105 3140
#> host-tRNA-Lys-TTT-1-1 518 281
#> host-tRNA-Lys-TTT-1-1-uncharged 1522 3990
#> host-tRNA-Lys-TTT-1-2 943 354
#> host-tRNA-Lys-TTT-1-2-uncharged 885 1409
#> host-tRNA-Lys-TTT-1-3 526 293
#> host-tRNA-Lys-TTT-1-3-uncharged 1565 3878
#> host-tRNA-Lys-TTT-1-4 329 278
#> host-tRNA-Lys-TTT-1-4-uncharged 1594 3973
#> host-tRNA-Lys-TTT-1-5 331 296
#> host-tRNA-Lys-TTT-1-5-uncharged 847 1466
#> host-tRNA-Lys-TTT-1-6 323 276
#> host-tRNA-Lys-TTT-1-6-uncharged 1904 1632
#> host-tRNA-Met-CAT-1-1 712 642
#> host-tRNA-Met-CAT-1-1-uncharged 2428 6345
#> host-tRNA-Met-CAT-1-2 665 657
#> host-tRNA-Met-CAT-1-2-uncharged 1735 2095
#> host-tRNA-Phe-GAA-1-1 1184 1692
#> host-tRNA-Phe-GAA-1-1-uncharged 845 2140
#> host-tRNA-Phe-GAA-1-2 385 393
#> host-tRNA-Phe-GAA-1-2-uncharged 1177 1801
#> host-tRNA-Pro-CGG-1-1 645 814
#> host-tRNA-Pro-CGG-1-1-uncharged 3567 11972
#> host-tRNA-Pro-GGG-1-1 108 211
#> host-tRNA-Pro-GGG-1-1-uncharged 496 2086
#> host-tRNA-Pro-TGG-1-1 425 741
#> host-tRNA-Pro-TGG-1-1-uncharged 2019 11718
#> host-tRNA-SeC-TCA-1-1 38 14
#> host-tRNA-SeC-TCA-1-1-uncharged 2125 3530
#> host-tRNA-Ser-CGA-1-1 86 49
#> host-tRNA-Ser-CGA-1-1-uncharged 1843 2265
#> host-tRNA-Ser-GCT-1-1 1513 916
#> host-tRNA-Ser-GCT-1-1-uncharged 4471 7116
#> host-tRNA-Ser-GGA-1-1 533 531
#> host-tRNA-Ser-GGA-1-1-uncharged 1988 3772
#> host-tRNA-Ser-GGA-1-2 377 183
#> host-tRNA-Ser-GGA-1-2-uncharged 2005 2706
#> host-tRNA-Ser-TGA-1-1 775 500
#> host-tRNA-Ser-TGA-1-1-uncharged 3257 5247
#> host-tRNA-Thr-CGT-1-1 289 334
#> host-tRNA-Thr-CGT-1-1-uncharged 2284 2387
#> host-tRNA-Thr-CGT-1-2 4 7
#> host-tRNA-Thr-CGT-1-2-uncharged 1489 442
#> host-tRNA-Thr-GGT-1-1 679 476
#> host-tRNA-Thr-GGT-1-1-uncharged 3484 5326
#> host-tRNA-Thr-GGT-1-2 741 485
#> host-tRNA-Thr-GGT-1-2-uncharged 4346 6629
#> host-tRNA-Thr-TGT-1-1 1295 1667
#> host-tRNA-Thr-TGT-1-1-uncharged 2188 6217
#> host-tRNA-Trp-CCA-1-1 1444 810
#> host-tRNA-Trp-CCA-1-1-uncharged 15682 14343
#> host-tRNA-Tyr-GTA-1-1 1280 662
#> host-tRNA-Tyr-GTA-1-1-uncharged 4191 6644
#> host-tRNA-Tyr-GTA-1-2 436 262
#> host-tRNA-Tyr-GTA-1-2-uncharged 1873 2501
#> host-tRNA-Tyr-GTA-1-3 497 252
#> host-tRNA-Tyr-GTA-1-3-uncharged 1788 2585
#> host-tRNA-Val-GAC-1-1 627 100
#> host-tRNA-Val-GAC-1-1-uncharged 2733 1823
#> host-tRNA-Val-GAC-1-2 1051 236
#> host-tRNA-Val-GAC-1-2-uncharged 2722 1725
#> host-tRNA-Val-TAC-1-1 863 427
#> host-tRNA-Val-TAC-1-1-uncharged 1772 1157
#> host-tRNA-Val-TAC-1-2 469 77
#> host-tRNA-Val-TAC-1-2-uncharged 2334 1937
#> host-tRNA-Val-TAC-1-3 460 77
#> host-tRNA-Val-TAC-1-3-uncharged 2348 1959
#> host-tRNA-Val-TAC-1-4 334 80
#> host-tRNA-Val-TAC-1-4-uncharged 1864 753
#> host-tRNA-Val-TAC-1-5 412 63
#> host-tRNA-Val-TAC-1-5-uncharged 1753 758
#> host-tRNA-fMet-CAT-1-1 87 416
#> host-tRNA-fMet-CAT-1-1-uncharged 1759 7937
#> host-tRNA-fMet-CAT-1-2 69 348
#> host-tRNA-fMet-CAT-1-2-uncharged 1630 5647
#> host-tRNA-fMet-CAT-1-3 120 469
#> host-tRNA-fMet-CAT-1-3-uncharged 2663 10962
#> host-tRNA-fMet-CAT-1-4 104 335
#> host-tRNA-fMet-CAT-1-4-uncharged 1999 6755
#> phage-tRNA-Arg-TCT 2 1
#> phage-tRNA-Arg-TCT-uncharged 1245 401
#> phage-tRNA-Gln-TTG 13 26
#> phage-tRNA-Gln-TTG-uncharged 3633 11616
#> phage-tRNA-Gly-TCC 29 4
#> phage-tRNA-Gly-TCC-uncharged 8034 4203
#> phage-tRNA-Ile2-CAT 7 1
#> phage-tRNA-Ile2-CAT-uncharged 1571 418
#> phage-tRNA-Leu-TAA 5 2
#> phage-tRNA-Leu-TAA-uncharged 1019 412
#> phage-tRNA-Pro-TGG 2 7
#> phage-tRNA-Pro-TGG-uncharged 595 820
#> phage-tRNA-Ser-TGA 2 3
#> phage-tRNA-Ser-TGA-uncharged 1280 832
#> phage-tRNA-Thr-TGT 4 0
#> phage-tRNA-Thr-TGT-uncharged 1023 619
#> wt-15-ctl-03_charged wt-15-ctl-03_uncharged
#> host-tRNA-Ala-GGC-1-1 62 51
#> host-tRNA-Ala-GGC-1-1-uncharged 343 540
#> host-tRNA-Ala-GGC-1-2 131 134
#> host-tRNA-Ala-GGC-1-2-uncharged 303 559
#> host-tRNA-Ala-TGC-1-1 91 69
#> host-tRNA-Ala-TGC-1-1-uncharged 410 641
#> host-tRNA-Ala-TGC-1-2 105 84
#> host-tRNA-Ala-TGC-1-2-uncharged 649 1533
#> host-tRNA-Ala-TGC-1-3 189 166
#> host-tRNA-Ala-TGC-1-3-uncharged 344 593
#> host-tRNA-Arg-ACG-1-1 196 112
#> host-tRNA-Arg-ACG-1-1-uncharged 783 1430
#> host-tRNA-Arg-ACG-1-2 286 174
#> host-tRNA-Arg-ACG-1-2-uncharged 770 1466
#> host-tRNA-Arg-ACG-1-3 219 124
#> host-tRNA-Arg-ACG-1-3-uncharged 842 1765
#> host-tRNA-Arg-ACG-1-4 260 119
#> host-tRNA-Arg-ACG-1-4-uncharged 758 1430
#> host-tRNA-Arg-CCG-1-1 32 53
#> host-tRNA-Arg-CCG-1-1-uncharged 95 244
#> host-tRNA-Arg-CCT-1-1 32 7
#> host-tRNA-Arg-CCT-1-1-uncharged 134 100
#> host-tRNA-Arg-TCT-1-1 55 60
#> host-tRNA-Arg-TCT-1-1-uncharged 137 336
#> host-tRNA-Asn-GTT-1-1 29 120
#> host-tRNA-Asn-GTT-1-1-uncharged 75 711
#> host-tRNA-Asn-GTT-1-2 17 109
#> host-tRNA-Asn-GTT-1-2-uncharged 96 675
#> host-tRNA-Asn-GTT-1-3 20 110
#> host-tRNA-Asn-GTT-1-3-uncharged 84 746
#> host-tRNA-Asn-GTT-1-4 26 126
#> host-tRNA-Asn-GTT-1-4-uncharged 309 2852
#> host-tRNA-Asp-GTC-1-1 857 339
#> host-tRNA-Asp-GTC-1-1-uncharged 1702 1182
#> host-tRNA-Asp-GTC-1-2 1127 588
#> host-tRNA-Asp-GTC-1-2-uncharged 1659 1178
#> host-tRNA-Asp-GTC-1-3 1164 573
#> host-tRNA-Asp-GTC-1-3-uncharged 1657 1156
#> host-tRNA-Cys-GCA-1-1 287 290
#> host-tRNA-Cys-GCA-1-1-uncharged 1566 2216
#> host-tRNA-Gln-CTG-1-1 231 164
#> host-tRNA-Gln-CTG-1-1-uncharged 538 847
#> host-tRNA-Gln-CTG-1-2 264 305
#> host-tRNA-Gln-CTG-1-2-uncharged 527 819
#> host-tRNA-Gln-TTG-1-1 244 146
#> host-tRNA-Gln-TTG-1-1-uncharged 812 1518
#> host-tRNA-Gln-TTG-1-2 302 191
#> host-tRNA-Gln-TTG-1-2-uncharged 572 686
#> host-tRNA-Glu-TTC-1-1 714 422
#> host-tRNA-Glu-TTC-1-1-uncharged 598 508
#> host-tRNA-Glu-TTC-1-2 652 514
#> host-tRNA-Glu-TTC-1-2-uncharged 623 493
#> host-tRNA-Glu-TTC-1-3 362 233
#> host-tRNA-Glu-TTC-1-3-uncharged 873 846
#> host-tRNA-Glu-TTC-1-4 393 213
#> host-tRNA-Glu-TTC-1-4-uncharged 1029 1286
#> host-tRNA-Gly-CCC-1-1 132 61
#> host-tRNA-Gly-CCC-1-1-uncharged 411 548
#> host-tRNA-Gly-GCC-1-1 266 174
#> host-tRNA-Gly-GCC-1-1-uncharged 796 2577
#> host-tRNA-Gly-GCC-1-2 257 177
#> host-tRNA-Gly-GCC-1-2-uncharged 813 2437
#> host-tRNA-Gly-GCC-1-3 251 189
#> host-tRNA-Gly-GCC-1-3-uncharged 761 2607
#> host-tRNA-Gly-GCC-1-4 360 447
#> host-tRNA-Gly-GCC-1-4-uncharged 760 1646
#> host-tRNA-Gly-TCC-1-1 258 146
#> host-tRNA-Gly-TCC-1-1-uncharged 568 1213
#> host-tRNA-His-GTG-1-1 205 271
#> host-tRNA-His-GTG-1-1-uncharged 680 1754
#> host-tRNA-Ile-GAT-1-1 7063 1383
#> host-tRNA-Ile-GAT-1-1-uncharged 17975 4261
#> host-tRNA-Ile-GAT-1-2 5980 1260
#> host-tRNA-Ile-GAT-1-2-uncharged 17419 4289
#> host-tRNA-Ile-GAT-1-3 7019 1497
#> host-tRNA-Ile-GAT-1-3-uncharged 17862 4342
#> host-tRNA-Ile2-CAT-1-1 1105 108
#> host-tRNA-Ile2-CAT-1-1-uncharged 1497 184
#> host-tRNA-Ile2-CAT-1-2 122 9
#> host-tRNA-Ile2-CAT-1-2-uncharged 209 48
#> host-tRNA-Leu-CAA-1-1 232 120
#> host-tRNA-Leu-CAA-1-1-uncharged 429 417
#> host-tRNA-Leu-CAG-1-1 299 63
#> host-tRNA-Leu-CAG-1-1-uncharged 990 751
#> host-tRNA-Leu-CAG-1-2 309 73
#> host-tRNA-Leu-CAG-1-2-uncharged 1089 951
#> host-tRNA-Leu-CAG-1-3 271 59
#> host-tRNA-Leu-CAG-1-3-uncharged 941 681
#> host-tRNA-Leu-CAG-1-4 385 111
#> host-tRNA-Leu-CAG-1-4-uncharged 1145 943
#> host-tRNA-Leu-GAG-1-1 196 69
#> host-tRNA-Leu-GAG-1-1-uncharged 871 861
#> host-tRNA-Leu-TAA-1-1 411 200
#> host-tRNA-Leu-TAA-1-1-uncharged 1030 1190
#> host-tRNA-Leu-TAG-1-1 292 145
#> host-tRNA-Leu-TAG-1-1-uncharged 754 505
#> host-tRNA-Lys-TTT-1-1 391 147
#> host-tRNA-Lys-TTT-1-1-uncharged 839 947
#> host-tRNA-Lys-TTT-1-2 631 204
#> host-tRNA-Lys-TTT-1-2-uncharged 506 404
#> host-tRNA-Lys-TTT-1-3 375 141
#> host-tRNA-Lys-TTT-1-3-uncharged 860 1037
#> host-tRNA-Lys-TTT-1-4 245 135
#> host-tRNA-Lys-TTT-1-4-uncharged 784 976
#> host-tRNA-Lys-TTT-1-5 253 122
#> host-tRNA-Lys-TTT-1-5-uncharged 506 404
#> host-tRNA-Lys-TTT-1-6 217 107
#> host-tRNA-Lys-TTT-1-6-uncharged 1054 545
#> host-tRNA-Met-CAT-1-1 450 205
#> host-tRNA-Met-CAT-1-1-uncharged 1051 1051
#> host-tRNA-Met-CAT-1-2 422 176
#> host-tRNA-Met-CAT-1-2-uncharged 956 497
#> host-tRNA-Phe-GAA-1-1 594 269
#> host-tRNA-Phe-GAA-1-1-uncharged 532 314
#> host-tRNA-Phe-GAA-1-2 313 103
#> host-tRNA-Phe-GAA-1-2-uncharged 713 344
#> host-tRNA-Pro-CGG-1-1 132 221
#> host-tRNA-Pro-CGG-1-1-uncharged 538 2342
#> host-tRNA-Pro-GGG-1-1 16 42
#> host-tRNA-Pro-GGG-1-1-uncharged 70 326
#> host-tRNA-Pro-TGG-1-1 97 216
#> host-tRNA-Pro-TGG-1-1-uncharged 279 1736
#> host-tRNA-SeC-TCA-1-1 18 13
#> host-tRNA-SeC-TCA-1-1-uncharged 349 472
#> host-tRNA-Ser-CGA-1-1 220 81
#> host-tRNA-Ser-CGA-1-1-uncharged 1068 849
#> host-tRNA-Ser-GCT-1-1 968 409
#> host-tRNA-Ser-GCT-1-1-uncharged 2089 1547
#> host-tRNA-Ser-GGA-1-1 360 226
#> host-tRNA-Ser-GGA-1-1-uncharged 791 881
#> host-tRNA-Ser-GGA-1-2 274 147
#> host-tRNA-Ser-GGA-1-2-uncharged 829 779
#> host-tRNA-Ser-TGA-1-1 677 178
#> host-tRNA-Ser-TGA-1-1-uncharged 1762 1112
#> host-tRNA-Thr-CGT-1-1 528 63
#> host-tRNA-Thr-CGT-1-1-uncharged 1297 271
#> host-tRNA-Thr-CGT-1-2 213 14
#> host-tRNA-Thr-CGT-1-2-uncharged 632 124
#> host-tRNA-Thr-GGT-1-1 1797 490
#> host-tRNA-Thr-GGT-1-1-uncharged 3474 1031
#> host-tRNA-Thr-GGT-1-2 2161 320
#> host-tRNA-Thr-GGT-1-2-uncharged 4734 1029
#> host-tRNA-Thr-TGT-1-1 2754 352
#> host-tRNA-Thr-TGT-1-1-uncharged 4126 812
#> host-tRNA-Trp-CCA-1-1 1103 415
#> host-tRNA-Trp-CCA-1-1-uncharged 4123 2940
#> host-tRNA-Tyr-GTA-1-1 487 121
#> host-tRNA-Tyr-GTA-1-1-uncharged 1536 761
#> host-tRNA-Tyr-GTA-1-2 437 91
#> host-tRNA-Tyr-GTA-1-2-uncharged 1271 500
#> host-tRNA-Tyr-GTA-1-3 459 108
#> host-tRNA-Tyr-GTA-1-3-uncharged 1357 543
#> host-tRNA-Val-GAC-1-1 1143 113
#> host-tRNA-Val-GAC-1-1-uncharged 2944 475
#> host-tRNA-Val-GAC-1-2 2189 237
#> host-tRNA-Val-GAC-1-2-uncharged 4681 637
#> host-tRNA-Val-TAC-1-1 960 150
#> host-tRNA-Val-TAC-1-1-uncharged 1921 296
#> host-tRNA-Val-TAC-1-2 886 83
#> host-tRNA-Val-TAC-1-2-uncharged 2065 361
#> host-tRNA-Val-TAC-1-3 872 88
#> host-tRNA-Val-TAC-1-3-uncharged 2086 389
#> host-tRNA-Val-TAC-1-4 764 92
#> host-tRNA-Val-TAC-1-4-uncharged 1831 288
#> host-tRNA-Val-TAC-1-5 867 81
#> host-tRNA-Val-TAC-1-5-uncharged 1909 293
#> host-tRNA-fMet-CAT-1-1 37 161
#> host-tRNA-fMet-CAT-1-1-uncharged 291 1507
#> host-tRNA-fMet-CAT-1-2 23 129
#> host-tRNA-fMet-CAT-1-2-uncharged 256 1200
#> host-tRNA-fMet-CAT-1-3 33 173
#> host-tRNA-fMet-CAT-1-3-uncharged 382 1973
#> host-tRNA-fMet-CAT-1-4 43 156
#> host-tRNA-fMet-CAT-1-4-uncharged 324 1563
#> phage-tRNA-Arg-TCT 2 0
#> phage-tRNA-Arg-TCT-uncharged 162 68
#> phage-tRNA-Gln-TTG 9 9
#> phage-tRNA-Gln-TTG-uncharged 507 1545
#> phage-tRNA-Gly-TCC 236 13
#> phage-tRNA-Gly-TCC-uncharged 962 600
#> phage-tRNA-Ile2-CAT 9 2
#> phage-tRNA-Ile2-CAT-uncharged 243 73
#> phage-tRNA-Leu-TAA 17 5
#> phage-tRNA-Leu-TAA-uncharged 287 107
#> phage-tRNA-Pro-TGG 3 4
#> phage-tRNA-Pro-TGG-uncharged 146 189
#> phage-tRNA-Ser-TGA 8 5
#> phage-tRNA-Ser-TGA-uncharged 210 147
#> phage-tRNA-Thr-TGT 19 9
#> phage-tRNA-Thr-TGT-uncharged 264 90
#> wt-15-inf-01_charged wt-15-inf-01_uncharged
#> host-tRNA-Ala-GGC-1-1 94 95
#> host-tRNA-Ala-GGC-1-1-uncharged 735 2905
#> host-tRNA-Ala-GGC-1-2 500 799
#> host-tRNA-Ala-GGC-1-2-uncharged 702 2935
#> host-tRNA-Ala-TGC-1-1 105 128
#> host-tRNA-Ala-TGC-1-1-uncharged 675 2326
#> host-tRNA-Ala-TGC-1-2 221 156
#> host-tRNA-Ala-TGC-1-2-uncharged 3036 11660
#> host-tRNA-Ala-TGC-1-3 644 1045
#> host-tRNA-Ala-TGC-1-3-uncharged 686 2108
#> host-tRNA-Arg-ACG-1-1 455 364
#> host-tRNA-Arg-ACG-1-1-uncharged 1607 6159
#> host-tRNA-Arg-ACG-1-2 706 462
#> host-tRNA-Arg-ACG-1-2-uncharged 1579 6229
#> host-tRNA-Arg-ACG-1-3 489 370
#> host-tRNA-Arg-ACG-1-3-uncharged 1754 8875
#> host-tRNA-Arg-ACG-1-4 599 466
#> host-tRNA-Arg-ACG-1-4-uncharged 1604 6152
#> host-tRNA-Arg-CCG-1-1 62 154
#> host-tRNA-Arg-CCG-1-1-uncharged 257 888
#> host-tRNA-Arg-CCT-1-1 102 41
#> host-tRNA-Arg-CCT-1-1-uncharged 229 263
#> host-tRNA-Arg-TCT-1-1 73 115
#> host-tRNA-Arg-TCT-1-1-uncharged 407 1359
#> host-tRNA-Asn-GTT-1-1 58 264
#> host-tRNA-Asn-GTT-1-1-uncharged 179 1617
#> host-tRNA-Asn-GTT-1-2 30 235
#> host-tRNA-Asn-GTT-1-2-uncharged 172 1630
#> host-tRNA-Asn-GTT-1-3 56 274
#> host-tRNA-Asn-GTT-1-3-uncharged 169 1715
#> host-tRNA-Asn-GTT-1-4 52 259
#> host-tRNA-Asn-GTT-1-4-uncharged 1335 12165
#> host-tRNA-Asp-GTC-1-1 641 361
#> host-tRNA-Asp-GTC-1-1-uncharged 1556 3275
#> host-tRNA-Asp-GTC-1-2 963 1529
#> host-tRNA-Asp-GTC-1-2-uncharged 1396 3194
#> host-tRNA-Asp-GTC-1-3 938 1537
#> host-tRNA-Asp-GTC-1-3-uncharged 1473 3375
#> host-tRNA-Cys-GCA-1-1 237 534
#> host-tRNA-Cys-GCA-1-1-uncharged 1808 6012
#> host-tRNA-Gln-CTG-1-1 342 246
#> host-tRNA-Gln-CTG-1-1-uncharged 747 2909
#> host-tRNA-Gln-CTG-1-2 462 1524
#> host-tRNA-Gln-CTG-1-2-uncharged 755 2991
#> host-tRNA-Gln-TTG-1-1 259 209
#> host-tRNA-Gln-TTG-1-1-uncharged 1032 5966
#> host-tRNA-Gln-TTG-1-2 345 370
#> host-tRNA-Gln-TTG-1-2-uncharged 745 1522
#> host-tRNA-Glu-TTC-1-1 1517 1772
#> host-tRNA-Glu-TTC-1-1-uncharged 731 739
#> host-tRNA-Glu-TTC-1-2 1528 1794
#> host-tRNA-Glu-TTC-1-2-uncharged 735 751
#> host-tRNA-Glu-TTC-1-3 425 249
#> host-tRNA-Glu-TTC-1-3-uncharged 1939 2666
#> host-tRNA-Glu-TTC-1-4 406 254
#> host-tRNA-Glu-TTC-1-4-uncharged 2467 6625
#> host-tRNA-Gly-CCC-1-1 100 86
#> host-tRNA-Gly-CCC-1-1-uncharged 514 1940
#> host-tRNA-Gly-GCC-1-1 168 175
#> host-tRNA-Gly-GCC-1-1-uncharged 1071 7854
#> host-tRNA-Gly-GCC-1-2 163 174
#> host-tRNA-Gly-GCC-1-2-uncharged 1096 7874
#> host-tRNA-Gly-GCC-1-3 155 148
#> host-tRNA-Gly-GCC-1-3-uncharged 1143 7877
#> host-tRNA-Gly-GCC-1-4 405 1050
#> host-tRNA-Gly-GCC-1-4-uncharged 663 2820
#> host-tRNA-Gly-TCC-1-1 229 310
#> host-tRNA-Gly-TCC-1-1-uncharged 859 3859
#> host-tRNA-His-GTG-1-1 232 664
#> host-tRNA-His-GTG-1-1-uncharged 839 6728
#> host-tRNA-Ile-GAT-1-1 1632 432
#> host-tRNA-Ile-GAT-1-1-uncharged 5385 3849
#> host-tRNA-Ile-GAT-1-2 1451 368
#> host-tRNA-Ile-GAT-1-2-uncharged 5489 3893
#> host-tRNA-Ile-GAT-1-3 1569 380
#> host-tRNA-Ile-GAT-1-3-uncharged 5513 3821
#> host-tRNA-Ile2-CAT-1-1 299 127
#> host-tRNA-Ile2-CAT-1-1-uncharged 538 350
#> host-tRNA-Ile2-CAT-1-2 43 19
#> host-tRNA-Ile2-CAT-1-2-uncharged 161 122
#> host-tRNA-Leu-CAA-1-1 456 441
#> host-tRNA-Leu-CAA-1-1-uncharged 799 1706
#> host-tRNA-Leu-CAG-1-1 198 78
#> host-tRNA-Leu-CAG-1-1-uncharged 556 975
#> host-tRNA-Leu-CAG-1-2 206 83
#> host-tRNA-Leu-CAG-1-2-uncharged 1119 3060
#> host-tRNA-Leu-CAG-1-3 200 97
#> host-tRNA-Leu-CAG-1-3-uncharged 553 1389
#> host-tRNA-Leu-CAG-1-4 811 348
#> host-tRNA-Leu-CAG-1-4-uncharged 1066 3203
#> host-tRNA-Leu-GAG-1-1 298 217
#> host-tRNA-Leu-GAG-1-1-uncharged 1195 4684
#> host-tRNA-Leu-TAA-1-1 408 495
#> host-tRNA-Leu-TAA-1-1-uncharged 1152 4763
#> host-tRNA-Leu-TAG-1-1 560 798
#> host-tRNA-Leu-TAG-1-1-uncharged 1003 2653
#> host-tRNA-Lys-TTT-1-1 326 263
#> host-tRNA-Lys-TTT-1-1-uncharged 1277 4518
#> host-tRNA-Lys-TTT-1-2 687 397
#> host-tRNA-Lys-TTT-1-2-uncharged 553 1260
#> host-tRNA-Lys-TTT-1-3 309 250
#> host-tRNA-Lys-TTT-1-3-uncharged 1191 4363
#> host-tRNA-Lys-TTT-1-4 202 261
#> host-tRNA-Lys-TTT-1-4-uncharged 1241 4536
#> host-tRNA-Lys-TTT-1-5 235 282
#> host-tRNA-Lys-TTT-1-5-uncharged 511 1331
#> host-tRNA-Lys-TTT-1-6 215 269
#> host-tRNA-Lys-TTT-1-6-uncharged 1059 1463
#> host-tRNA-Met-CAT-1-1 521 526
#> host-tRNA-Met-CAT-1-1-uncharged 1680 4972
#> host-tRNA-Met-CAT-1-2 502 557
#> host-tRNA-Met-CAT-1-2-uncharged 1096 1460
#> host-tRNA-Phe-GAA-1-1 576 1253
#> host-tRNA-Phe-GAA-1-1-uncharged 427 1236
#> host-tRNA-Phe-GAA-1-2 184 216
#> host-tRNA-Phe-GAA-1-2-uncharged 587 975
#> host-tRNA-Pro-CGG-1-1 220 686
#> host-tRNA-Pro-CGG-1-1-uncharged 909 8685
#> host-tRNA-Pro-GGG-1-1 20 138
#> host-tRNA-Pro-GGG-1-1-uncharged 139 1483
#> host-tRNA-Pro-TGG-1-1 94 473
#> host-tRNA-Pro-TGG-1-1-uncharged 663 10301
#> host-tRNA-SeC-TCA-1-1 6 4
#> host-tRNA-SeC-TCA-1-1-uncharged 340 614
#> host-tRNA-Ser-CGA-1-1 40 36
#> host-tRNA-Ser-CGA-1-1-uncharged 584 600
#> host-tRNA-Ser-GCT-1-1 854 644
#> host-tRNA-Ser-GCT-1-1-uncharged 2137 4519
#> host-tRNA-Ser-GGA-1-1 318 501
#> host-tRNA-Ser-GGA-1-1-uncharged 916 2397
#> host-tRNA-Ser-GGA-1-2 214 84
#> host-tRNA-Ser-GGA-1-2-uncharged 934 1363
#> host-tRNA-Ser-TGA-1-1 319 427
#> host-tRNA-Ser-TGA-1-1-uncharged 1189 3389
#> host-tRNA-Thr-CGT-1-1 283 138
#> host-tRNA-Thr-CGT-1-1-uncharged 1015 736
#> host-tRNA-Thr-CGT-1-2 4 1
#> host-tRNA-Thr-CGT-1-2-uncharged 229 79
#> host-tRNA-Thr-GGT-1-1 821 369
#> host-tRNA-Thr-GGT-1-1-uncharged 2534 2489
#> host-tRNA-Thr-GGT-1-2 1040 351
#> host-tRNA-Thr-GGT-1-2-uncharged 3564 3153
#> host-tRNA-Thr-TGT-1-1 1466 783
#> host-tRNA-Thr-TGT-1-1-uncharged 2399 2399
#> host-tRNA-Trp-CCA-1-1 444 489
#> host-tRNA-Trp-CCA-1-1-uncharged 3118 5012
#> host-tRNA-Tyr-GTA-1-1 690 482
#> host-tRNA-Tyr-GTA-1-1-uncharged 2044 4045
#> host-tRNA-Tyr-GTA-1-2 252 155
#> host-tRNA-Tyr-GTA-1-2-uncharged 799 1469
#> host-tRNA-Tyr-GTA-1-3 281 172
#> host-tRNA-Tyr-GTA-1-3-uncharged 794 1513
#> host-tRNA-Val-GAC-1-1 381 60
#> host-tRNA-Val-GAC-1-1-uncharged 1557 1056
#> host-tRNA-Val-GAC-1-2 707 140
#> host-tRNA-Val-GAC-1-2-uncharged 1829 1306
#> host-tRNA-Val-TAC-1-1 808 518
#> host-tRNA-Val-TAC-1-1-uncharged 959 717
#> host-tRNA-Val-TAC-1-2 456 76
#> host-tRNA-Val-TAC-1-2-uncharged 1528 1564
#> host-tRNA-Val-TAC-1-3 422 68
#> host-tRNA-Val-TAC-1-3-uncharged 1508 1591
#> host-tRNA-Val-TAC-1-4 322 74
#> host-tRNA-Val-TAC-1-4-uncharged 1150 386
#> host-tRNA-Val-TAC-1-5 453 84
#> host-tRNA-Val-TAC-1-5-uncharged 1164 383
#> host-tRNA-fMet-CAT-1-1 110 381
#> host-tRNA-fMet-CAT-1-1-uncharged 826 6075
#> host-tRNA-fMet-CAT-1-2 102 324
#> host-tRNA-fMet-CAT-1-2-uncharged 768 4309
#> host-tRNA-fMet-CAT-1-3 124 381
#> host-tRNA-fMet-CAT-1-3-uncharged 1748 7727
#> host-tRNA-fMet-CAT-1-4 78 279
#> host-tRNA-fMet-CAT-1-4-uncharged 1037 4393
#> phage-tRNA-Arg-TCT 92 88
#> phage-tRNA-Arg-TCT-uncharged 634 2364
#> phage-tRNA-Gln-TTG 190 251
#> phage-tRNA-Gln-TTG-uncharged 1274 4081
#> phage-tRNA-Gly-TCC 163 178
#> phage-tRNA-Gly-TCC-uncharged 1834 3730
#> phage-tRNA-Ile2-CAT 428 73
#> phage-tRNA-Ile2-CAT-uncharged 1738 861
#> phage-tRNA-Leu-TAA 153 88
#> phage-tRNA-Leu-TAA-uncharged 840 2084
#> phage-tRNA-Pro-TGG 19 90
#> phage-tRNA-Pro-TGG-uncharged 212 2651
#> phage-tRNA-Ser-TGA 98 55
#> phage-tRNA-Ser-TGA-uncharged 605 1069
#> phage-tRNA-Thr-TGT 427 123
#> phage-tRNA-Thr-TGT-uncharged 1469 1267
#> wt-15-inf-02_charged wt-15-inf-02_uncharged
#> host-tRNA-Ala-GGC-1-1 176 171
#> host-tRNA-Ala-GGC-1-1-uncharged 1856 5277
#> host-tRNA-Ala-GGC-1-2 802 1055
#> host-tRNA-Ala-GGC-1-2-uncharged 1862 5549
#> host-tRNA-Ala-TGC-1-1 280 273
#> host-tRNA-Ala-TGC-1-1-uncharged 2131 5173
#> host-tRNA-Ala-TGC-1-2 427 301
#> host-tRNA-Ala-TGC-1-2-uncharged 6345 19711
#> host-tRNA-Ala-TGC-1-3 1098 1625
#> host-tRNA-Ala-TGC-1-3-uncharged 2135 5217
#> host-tRNA-Arg-ACG-1-1 829 858
#> host-tRNA-Arg-ACG-1-1-uncharged 3071 15154
#> host-tRNA-Arg-ACG-1-2 1253 1053
#> host-tRNA-Arg-ACG-1-2-uncharged 3202 15065
#> host-tRNA-Arg-ACG-1-3 887 797
#> host-tRNA-Arg-ACG-1-3-uncharged 3851 23590
#> host-tRNA-Arg-ACG-1-4 1086 978
#> host-tRNA-Arg-ACG-1-4-uncharged 3125 15082
#> host-tRNA-Arg-CCG-1-1 124 326
#> host-tRNA-Arg-CCG-1-1-uncharged 536 2371
#> host-tRNA-Arg-CCT-1-1 286 123
#> host-tRNA-Arg-CCT-1-1-uncharged 1271 1125
#> host-tRNA-Arg-TCT-1-1 112 229
#> host-tRNA-Arg-TCT-1-1-uncharged 541 2890
#> host-tRNA-Asn-GTT-1-1 107 725
#> host-tRNA-Asn-GTT-1-1-uncharged 429 4020
#> host-tRNA-Asn-GTT-1-2 80 553
#> host-tRNA-Asn-GTT-1-2-uncharged 451 4222
#> host-tRNA-Asn-GTT-1-3 118 669
#> host-tRNA-Asn-GTT-1-3-uncharged 449 4170
#> host-tRNA-Asn-GTT-1-4 135 613
#> host-tRNA-Asn-GTT-1-4-uncharged 3169 33650
#> host-tRNA-Asp-GTC-1-1 1315 938
#> host-tRNA-Asp-GTC-1-1-uncharged 3444 10445
#> host-tRNA-Asp-GTC-1-2 2392 4425
#> host-tRNA-Asp-GTC-1-2-uncharged 3542 9829
#> host-tRNA-Asp-GTC-1-3 2425 4347
#> host-tRNA-Asp-GTC-1-3-uncharged 3524 10155
#> host-tRNA-Cys-GCA-1-1 460 1293
#> host-tRNA-Cys-GCA-1-1-uncharged 13974 21559
#> host-tRNA-Gln-CTG-1-1 403 497
#> host-tRNA-Gln-CTG-1-1-uncharged 1288 8572
#> host-tRNA-Gln-CTG-1-2 1024 3726
#> host-tRNA-Gln-CTG-1-2-uncharged 1335 8558
#> host-tRNA-Gln-TTG-1-1 318 542
#> host-tRNA-Gln-TTG-1-1-uncharged 2069 16571
#> host-tRNA-Gln-TTG-1-2 437 818
#> host-tRNA-Gln-TTG-1-2-uncharged 1119 4344
#> host-tRNA-Glu-TTC-1-1 2274 2308
#> host-tRNA-Glu-TTC-1-1-uncharged 1489 1230
#> host-tRNA-Glu-TTC-1-2 2222 2390
#> host-tRNA-Glu-TTC-1-2-uncharged 1452 1173
#> host-tRNA-Glu-TTC-1-3 679 385
#> host-tRNA-Glu-TTC-1-3-uncharged 3468 3865
#> host-tRNA-Glu-TTC-1-4 637 387
#> host-tRNA-Glu-TTC-1-4-uncharged 3981 8718
#> host-tRNA-Gly-CCC-1-1 185 211
#> host-tRNA-Gly-CCC-1-1-uncharged 2103 6305
#> host-tRNA-Gly-GCC-1-1 368 379
#> host-tRNA-Gly-GCC-1-1-uncharged 3453 26851
#> host-tRNA-Gly-GCC-1-2 396 374
#> host-tRNA-Gly-GCC-1-2-uncharged 3449 26294
#> host-tRNA-Gly-GCC-1-3 350 312
#> host-tRNA-Gly-GCC-1-3-uncharged 3372 26413
#> host-tRNA-Gly-GCC-1-4 1068 3363
#> host-tRNA-Gly-GCC-1-4-uncharged 2026 8500
#> host-tRNA-Gly-TCC-1-1 539 728
#> host-tRNA-Gly-TCC-1-1-uncharged 2493 9334
#> host-tRNA-His-GTG-1-1 554 1656
#> host-tRNA-His-GTG-1-1-uncharged 2863 20569
#> host-tRNA-Ile-GAT-1-1 4946 1142
#> host-tRNA-Ile-GAT-1-1-uncharged 16228 12798
#> host-tRNA-Ile-GAT-1-2 3857 1010
#> host-tRNA-Ile-GAT-1-2-uncharged 16132 12449
#> host-tRNA-Ile-GAT-1-3 4854 1129
#> host-tRNA-Ile-GAT-1-3-uncharged 16277 12666
#> host-tRNA-Ile2-CAT-1-1 1076 473
#> host-tRNA-Ile2-CAT-1-1-uncharged 1866 1163
#> host-tRNA-Ile2-CAT-1-2 127 46
#> host-tRNA-Ile2-CAT-1-2-uncharged 458 248
#> host-tRNA-Leu-CAA-1-1 2090 1891
#> host-tRNA-Leu-CAA-1-1-uncharged 3876 10208
#> host-tRNA-Leu-CAG-1-1 1341 535
#> host-tRNA-Leu-CAG-1-1-uncharged 3543 7829
#> host-tRNA-Leu-CAG-1-2 1099 400
#> host-tRNA-Leu-CAG-1-2-uncharged 5594 17205
#> host-tRNA-Leu-CAG-1-3 871 323
#> host-tRNA-Leu-CAG-1-3-uncharged 2779 8401
#> host-tRNA-Leu-CAG-1-4 3742 1639
#> host-tRNA-Leu-CAG-1-4-uncharged 5577 16874
#> host-tRNA-Leu-GAG-1-1 717 592
#> host-tRNA-Leu-GAG-1-1-uncharged 4003 15478
#> host-tRNA-Leu-TAA-1-1 1500 1583
#> host-tRNA-Leu-TAA-1-1-uncharged 5058 19259
#> host-tRNA-Leu-TAG-1-1 1232 1653
#> host-tRNA-Leu-TAG-1-1-uncharged 2631 7792
#> host-tRNA-Lys-TTT-1-1 605 587
#> host-tRNA-Lys-TTT-1-1-uncharged 2550 10320
#> host-tRNA-Lys-TTT-1-2 1211 1037
#> host-tRNA-Lys-TTT-1-2-uncharged 1276 4558
#> host-tRNA-Lys-TTT-1-3 633 627
#> host-tRNA-Lys-TTT-1-3-uncharged 2578 9935
#> host-tRNA-Lys-TTT-1-4 453 634
#> host-tRNA-Lys-TTT-1-4-uncharged 2616 10290
#> host-tRNA-Lys-TTT-1-5 414 654
#> host-tRNA-Lys-TTT-1-5-uncharged 1285 4445
#> host-tRNA-Lys-TTT-1-6 410 656
#> host-tRNA-Lys-TTT-1-6-uncharged 2259 4836
#> host-tRNA-Met-CAT-1-1 824 1428
#> host-tRNA-Met-CAT-1-1-uncharged 3897 14725
#> host-tRNA-Met-CAT-1-2 900 1460
#> host-tRNA-Met-CAT-1-2-uncharged 2452 5408
#> host-tRNA-Phe-GAA-1-1 1334 3160
#> host-tRNA-Phe-GAA-1-1-uncharged 1194 3887
#> host-tRNA-Phe-GAA-1-2 392 632
#> host-tRNA-Phe-GAA-1-2-uncharged 1565 3241
#> host-tRNA-Pro-CGG-1-1 455 1398
#> host-tRNA-Pro-CGG-1-1-uncharged 4124 20670
#> host-tRNA-Pro-GGG-1-1 24 89
#> host-tRNA-Pro-GGG-1-1-uncharged 348 1274
#> host-tRNA-Pro-TGG-1-1 193 874
#> host-tRNA-Pro-TGG-1-1-uncharged 1501 20635
#> host-tRNA-SeC-TCA-1-1 20 19
#> host-tRNA-SeC-TCA-1-1-uncharged 3266 5184
#> host-tRNA-Ser-CGA-1-1 93 82
#> host-tRNA-Ser-CGA-1-1-uncharged 2906 3513
#> host-tRNA-Ser-GCT-1-1 1639 1864
#> host-tRNA-Ser-GCT-1-1-uncharged 6148 14711
#> host-tRNA-Ser-GGA-1-1 694 1335
#> host-tRNA-Ser-GGA-1-1-uncharged 3257 8176
#> host-tRNA-Ser-GGA-1-2 390 231
#> host-tRNA-Ser-GGA-1-2-uncharged 3108 5383
#> host-tRNA-Ser-TGA-1-1 827 1224
#> host-tRNA-Ser-TGA-1-1-uncharged 4074 11493
#> host-tRNA-Thr-CGT-1-1 760 490
#> host-tRNA-Thr-CGT-1-1-uncharged 4164 3598
#> host-tRNA-Thr-CGT-1-2 22 4
#> host-tRNA-Thr-CGT-1-2-uncharged 2111 628
#> host-tRNA-Thr-GGT-1-1 1811 869
#> host-tRNA-Thr-GGT-1-1-uncharged 7016 8166
#> host-tRNA-Thr-GGT-1-2 2101 737
#> host-tRNA-Thr-GGT-1-2-uncharged 9272 9896
#> host-tRNA-Thr-TGT-1-1 3250 2346
#> host-tRNA-Thr-TGT-1-1-uncharged 5433 9031
#> host-tRNA-Trp-CCA-1-1 1522 1619
#> host-tRNA-Trp-CCA-1-1-uncharged 22500 25880
#> host-tRNA-Tyr-GTA-1-1 1540 1155
#> host-tRNA-Tyr-GTA-1-1-uncharged 5860 13716
#> host-tRNA-Tyr-GTA-1-2 501 469
#> host-tRNA-Tyr-GTA-1-2-uncharged 2735 5229
#> host-tRNA-Tyr-GTA-1-3 606 444
#> host-tRNA-Tyr-GTA-1-3-uncharged 2759 5186
#> host-tRNA-Val-GAC-1-1 1133 184
#> host-tRNA-Val-GAC-1-1-uncharged 4442 3542
#> host-tRNA-Val-GAC-1-2 1743 204
#> host-tRNA-Val-GAC-1-2-uncharged 4571 1825
#> host-tRNA-Val-TAC-1-1 1370 772
#> host-tRNA-Val-TAC-1-1-uncharged 3011 2194
#> host-tRNA-Val-TAC-1-2 941 139
#> host-tRNA-Val-TAC-1-2-uncharged 3679 3228
#> host-tRNA-Val-TAC-1-3 855 114
#> host-tRNA-Val-TAC-1-3-uncharged 3750 3249
#> host-tRNA-Val-TAC-1-4 615 143
#> host-tRNA-Val-TAC-1-4-uncharged 3081 1380
#> host-tRNA-Val-TAC-1-5 759 104
#> host-tRNA-Val-TAC-1-5-uncharged 3125 1458
#> host-tRNA-fMet-CAT-1-1 227 823
#> host-tRNA-fMet-CAT-1-1-uncharged 3233 17953
#> host-tRNA-fMet-CAT-1-2 174 772
#> host-tRNA-fMet-CAT-1-2-uncharged 3010 13994
#> host-tRNA-fMet-CAT-1-3 281 1030
#> host-tRNA-fMet-CAT-1-3-uncharged 4782 22715
#> host-tRNA-fMet-CAT-1-4 204 694
#> host-tRNA-fMet-CAT-1-4-uncharged 3608 14442
#> phage-tRNA-Arg-TCT 56 73
#> phage-tRNA-Arg-TCT-uncharged 1915 2455
#> phage-tRNA-Gln-TTG 184 409
#> phage-tRNA-Gln-TTG-uncharged 6046 21917
#> phage-tRNA-Gly-TCC 262 372
#> phage-tRNA-Gly-TCC-uncharged 13197 12930
#> phage-tRNA-Ile2-CAT 623 97
#> phage-tRNA-Ile2-CAT-uncharged 4309 1933
#> phage-tRNA-Leu-TAA 262 190
#> phage-tRNA-Leu-TAA-uncharged 2797 4691
#> phage-tRNA-Pro-TGG 34 103
#> phage-tRNA-Pro-TGG-uncharged 1030 4816
#> phage-tRNA-Ser-TGA 166 117
#> phage-tRNA-Ser-TGA-uncharged 2696 3245
#> phage-tRNA-Thr-TGT 607 189
#> phage-tRNA-Thr-TGT-uncharged 3152 2971
#> wt-15-inf-03_charged wt-15-inf-03_uncharged
#> host-tRNA-Ala-GGC-1-1 818 435
#> host-tRNA-Ala-GGC-1-1-uncharged 3869 8968
#> host-tRNA-Ala-GGC-1-2 2506 1903
#> host-tRNA-Ala-GGC-1-2-uncharged 3784 8808
#> host-tRNA-Ala-TGC-1-1 1097 609
#> host-tRNA-Ala-TGC-1-1-uncharged 4459 8496
#> host-tRNA-Ala-TGC-1-2 1791 789
#> host-tRNA-Ala-TGC-1-2-uncharged 12613 30937
#> host-tRNA-Ala-TGC-1-3 3354 2689
#> host-tRNA-Ala-TGC-1-3-uncharged 4605 8486
#> host-tRNA-Arg-ACG-1-1 3212 1327
#> host-tRNA-Arg-ACG-1-1-uncharged 10133 21454
#> host-tRNA-Arg-ACG-1-2 4772 1821
#> host-tRNA-Arg-ACG-1-2-uncharged 10138 21710
#> host-tRNA-Arg-ACG-1-3 3235 1347
#> host-tRNA-Arg-ACG-1-3-uncharged 11571 32546
#> host-tRNA-Arg-ACG-1-4 3854 1699
#> host-tRNA-Arg-ACG-1-4-uncharged 9989 21517
#> host-tRNA-Arg-CCG-1-1 459 613
#> host-tRNA-Arg-CCG-1-1-uncharged 1437 3780
#> host-tRNA-Arg-CCT-1-1 554 143
#> host-tRNA-Arg-CCT-1-1-uncharged 1608 1239
#> host-tRNA-Arg-TCT-1-1 489 405
#> host-tRNA-Arg-TCT-1-1-uncharged 1406 4274
#> host-tRNA-Asn-GTT-1-1 253 1079
#> host-tRNA-Asn-GTT-1-1-uncharged 783 7238
#> host-tRNA-Asn-GTT-1-2 183 953
#> host-tRNA-Asn-GTT-1-2-uncharged 746 7366
#> host-tRNA-Asn-GTT-1-3 281 1105
#> host-tRNA-Asn-GTT-1-3-uncharged 808 7339
#> host-tRNA-Asn-GTT-1-4 249 1101
#> host-tRNA-Asn-GTT-1-4-uncharged 5181 47252
#> host-tRNA-Asp-GTC-1-1 4418 1813
#> host-tRNA-Asp-GTC-1-1-uncharged 9383 12933
#> host-tRNA-Asp-GTC-1-2 7206 5922
#> host-tRNA-Asp-GTC-1-2-uncharged 9286 12514
#> host-tRNA-Asp-GTC-1-3 7148 5906
#> host-tRNA-Asp-GTC-1-3-uncharged 9112 12853
#> host-tRNA-Cys-GCA-1-1 1090 2121
#> host-tRNA-Cys-GCA-1-1-uncharged 11368 26635
#> host-tRNA-Gln-CTG-1-1 1940 983
#> host-tRNA-Gln-CTG-1-1-uncharged 4725 11272
#> host-tRNA-Gln-CTG-1-2 3525 5078
#> host-tRNA-Gln-CTG-1-2-uncharged 4608 11173
#> host-tRNA-Gln-TTG-1-1 1621 1008
#> host-tRNA-Gln-TTG-1-1-uncharged 6728 21701
#> host-tRNA-Gln-TTG-1-2 2041 1514
#> host-tRNA-Gln-TTG-1-2-uncharged 4365 6970
#> host-tRNA-Glu-TTC-1-1 8195 6388
#> host-tRNA-Glu-TTC-1-1-uncharged 5131 3706
#> host-tRNA-Glu-TTC-1-2 8188 6250
#> host-tRNA-Glu-TTC-1-2-uncharged 5179 3752
#> host-tRNA-Glu-TTC-1-3 3158 1599
#> host-tRNA-Glu-TTC-1-3-uncharged 11507 10977
#> host-tRNA-Glu-TTC-1-4 3118 1639
#> host-tRNA-Glu-TTC-1-4-uncharged 12936 20746
#> host-tRNA-Gly-CCC-1-1 767 424
#> host-tRNA-Gly-CCC-1-1-uncharged 3592 7571
#> host-tRNA-Gly-GCC-1-1 1176 851
#> host-tRNA-Gly-GCC-1-1-uncharged 6126 32247
#> host-tRNA-Gly-GCC-1-2 1187 854
#> host-tRNA-Gly-GCC-1-2-uncharged 6222 31623
#> host-tRNA-Gly-GCC-1-3 1181 796
#> host-tRNA-Gly-GCC-1-3-uncharged 6190 31974
#> host-tRNA-Gly-GCC-1-4 2822 4710
#> host-tRNA-Gly-GCC-1-4-uncharged 4429 11075
#> host-tRNA-Gly-TCC-1-1 2169 1584
#> host-tRNA-Gly-TCC-1-1-uncharged 5758 16823
#> host-tRNA-His-GTG-1-1 1340 2850
#> host-tRNA-His-GTG-1-1-uncharged 4668 27892
#> host-tRNA-Ile-GAT-1-1 12369 2700
#> host-tRNA-Ile-GAT-1-1-uncharged 33423 15252
#> host-tRNA-Ile-GAT-1-2 10350 2189
#> host-tRNA-Ile-GAT-1-2-uncharged 32847 15117
#> host-tRNA-Ile-GAT-1-3 12435 2669
#> host-tRNA-Ile-GAT-1-3-uncharged 33384 15345
#> host-tRNA-Ile2-CAT-1-1 2351 474
#> host-tRNA-Ile2-CAT-1-1-uncharged 3648 1184
#> host-tRNA-Ile2-CAT-1-2 294 61
#> host-tRNA-Ile2-CAT-1-2-uncharged 870 482
#> host-tRNA-Leu-CAA-1-1 3110 1575
#> host-tRNA-Leu-CAA-1-1-uncharged 5508 7237
#> host-tRNA-Leu-CAG-1-1 3726 1169
#> host-tRNA-Leu-CAG-1-1-uncharged 9398 8865
#> host-tRNA-Leu-CAG-1-2 3389 1051
#> host-tRNA-Leu-CAG-1-2-uncharged 10693 16886
#> host-tRNA-Leu-CAG-1-3 2160 705
#> host-tRNA-Leu-CAG-1-3-uncharged 6151 8541
#> host-tRNA-Leu-CAG-1-4 6688 2558
#> host-tRNA-Leu-CAG-1-4-uncharged 10881 16817
#> host-tRNA-Leu-GAG-1-1 3438 936
#> host-tRNA-Leu-GAG-1-1-uncharged 11478 17309
#> host-tRNA-Leu-TAA-1-1 5239 1939
#> host-tRNA-Leu-TAA-1-1-uncharged 12167 17195
#> host-tRNA-Leu-TAG-1-1 4308 2063
#> host-tRNA-Leu-TAG-1-1-uncharged 7843 9071
#> host-tRNA-Lys-TTT-1-1 2175 887
#> host-tRNA-Lys-TTT-1-1-uncharged 6477 12710
#> host-tRNA-Lys-TTT-1-2 4295 1522
#> host-tRNA-Lys-TTT-1-2-uncharged 3665 5780
#> host-tRNA-Lys-TTT-1-3 2107 867
#> host-tRNA-Lys-TTT-1-3-uncharged 6272 12449
#> host-tRNA-Lys-TTT-1-4 1459 867
#> host-tRNA-Lys-TTT-1-4-uncharged 6479 12389
#> host-tRNA-Lys-TTT-1-5 1449 844
#> host-tRNA-Lys-TTT-1-5-uncharged 3679 5772
#> host-tRNA-Lys-TTT-1-6 1443 850
#> host-tRNA-Lys-TTT-1-6-uncharged 7368 6184
#> host-tRNA-Met-CAT-1-1 2738 1614
#> host-tRNA-Met-CAT-1-1-uncharged 8494 16320
#> host-tRNA-Met-CAT-1-2 2770 1574
#> host-tRNA-Met-CAT-1-2-uncharged 6489 6120
#> host-tRNA-Phe-GAA-1-1 3870 4150
#> host-tRNA-Phe-GAA-1-1-uncharged 3060 5378
#> host-tRNA-Phe-GAA-1-2 1286 836
#> host-tRNA-Phe-GAA-1-2-uncharged 4153 4571
#> host-tRNA-Pro-CGG-1-1 1442 2143
#> host-tRNA-Pro-CGG-1-1-uncharged 5652 27373
#> host-tRNA-Pro-GGG-1-1 232 444
#> host-tRNA-Pro-GGG-1-1-uncharged 914 4586
#> host-tRNA-Pro-TGG-1-1 1316 2153
#> host-tRNA-Pro-TGG-1-1-uncharged 4583 33123
#> host-tRNA-SeC-TCA-1-1 47 73
#> host-tRNA-SeC-TCA-1-1-uncharged 2971 4550
#> host-tRNA-Ser-CGA-1-1 267 188
#> host-tRNA-Ser-CGA-1-1-uncharged 3239 3742
#> host-tRNA-Ser-GCT-1-1 3367 2727
#> host-tRNA-Ser-GCT-1-1-uncharged 8699 16867
#> host-tRNA-Ser-GGA-1-1 1790 2033
#> host-tRNA-Ser-GGA-1-1-uncharged 4917 10459
#> host-tRNA-Ser-GGA-1-2 1127 606
#> host-tRNA-Ser-GGA-1-2-uncharged 4738 7238
#> host-tRNA-Ser-TGA-1-1 2048 1584
#> host-tRNA-Ser-TGA-1-1-uncharged 6701 14361
#> host-tRNA-Thr-CGT-1-1 2029 584
#> host-tRNA-Thr-CGT-1-1-uncharged 6541 3378
#> host-tRNA-Thr-CGT-1-2 76 10
#> host-tRNA-Thr-CGT-1-2-uncharged 2101 612
#> host-tRNA-Thr-GGT-1-1 5011 1656
#> host-tRNA-Thr-GGT-1-1-uncharged 12202 8741
#> host-tRNA-Thr-GGT-1-2 5804 1319
#> host-tRNA-Thr-GGT-1-2-uncharged 17078 10595
#> host-tRNA-Thr-TGT-1-1 8896 2586
#> host-tRNA-Thr-TGT-1-1-uncharged 12892 9194
#> host-tRNA-Trp-CCA-1-1 4483 2219
#> host-tRNA-Trp-CCA-1-1-uncharged 26538 24578
#> host-tRNA-Tyr-GTA-1-1 4737 1539
#> host-tRNA-Tyr-GTA-1-1-uncharged 13131 15546
#> host-tRNA-Tyr-GTA-1-2 1544 588
#> host-tRNA-Tyr-GTA-1-2-uncharged 5215 5962
#> host-tRNA-Tyr-GTA-1-3 1938 589
#> host-tRNA-Tyr-GTA-1-3-uncharged 5164 5995
#> host-tRNA-Val-GAC-1-1 2718 318
#> host-tRNA-Val-GAC-1-1-uncharged 9233 3734
#> host-tRNA-Val-GAC-1-2 4786 667
#> host-tRNA-Val-GAC-1-2-uncharged 11153 4513
#> host-tRNA-Val-TAC-1-1 3773 1127
#> host-tRNA-Val-TAC-1-1-uncharged 5039 2509
#> host-tRNA-Val-TAC-1-2 2223 266
#> host-tRNA-Val-TAC-1-2-uncharged 6640 4104
#> host-tRNA-Val-TAC-1-3 2264 259
#> host-tRNA-Val-TAC-1-3-uncharged 6825 4248
#> host-tRNA-Val-TAC-1-4 1683 266
#> host-tRNA-Val-TAC-1-4-uncharged 5187 1625
#> host-tRNA-Val-TAC-1-5 1928 255
#> host-tRNA-Val-TAC-1-5-uncharged 4885 1505
#> host-tRNA-fMet-CAT-1-1 419 1334
#> host-tRNA-fMet-CAT-1-1-uncharged 3855 23753
#> host-tRNA-fMet-CAT-1-2 330 1167
#> host-tRNA-fMet-CAT-1-2-uncharged 3580 18937
#> host-tRNA-fMet-CAT-1-3 450 1645
#> host-tRNA-fMet-CAT-1-3-uncharged 6300 30620
#> host-tRNA-fMet-CAT-1-4 291 1042
#> host-tRNA-fMet-CAT-1-4-uncharged 4199 17717
#> phage-tRNA-Arg-TCT 485 233
#> phage-tRNA-Arg-TCT-uncharged 3343 5628
#> phage-tRNA-Gln-TTG 751 556
#> phage-tRNA-Gln-TTG-uncharged 6752 19413
#> phage-tRNA-Gly-TCC 864 527
#> phage-tRNA-Gly-TCC-uncharged 10709 12863
#> phage-tRNA-Ile2-CAT 1815 159
#> phage-tRNA-Ile2-CAT-uncharged 7176 1994
#> phage-tRNA-Leu-TAA 1068 271
#> phage-tRNA-Leu-TAA-uncharged 5407 5143
#> phage-tRNA-Pro-TGG 149 257
#> phage-tRNA-Pro-TGG-uncharged 1367 7973
#> phage-tRNA-Ser-TGA 358 285
#> phage-tRNA-Ser-TGA-uncharged 2783 4769
#> phage-tRNA-Thr-TGT 1509 290
#> phage-tRNA-Thr-TGT-uncharged 5025 2898