Generate a small RangedSummarizedExperiment object for tests and examples

A RangedSummarizedExperiment containing a subset of data from an RNA-seq experiment to measure the effects of IFN treatment of cell lines with wild-type or ADAR1-KO.

Usage

mock_rse()

Source

https://www.ncbi.nlm.nih.gov/bioproject/PRJNA386593

Value

RangedSummarizedExperiment populated with pileup data

References

https://pubmed.ncbi.nlm.nih.gov/29395325/

Examples

mock_rse()
#> class: RangedSummarizedExperiment 
#> dim: 74 2 
#> metadata(0):
#> assays(7): ALT nRef ... nC nG
#> rownames(74): site_SSR3_102_2 site_SSR3_125_2 ... site_DHFR_430_2
#>   site_DHFR_513_2
#> rowData names(4): REF rpbz vdb sor
#> colnames(2): wt adar1_ko
#> colData names(1): sample